Detailed information NTG0328681

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FOY90_RS18270
• Genome accession: NZ_CP041772
• Coordinates: 3839575..3840579 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 243931
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3834575..3845579

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FOY90_RS18240 (FOY90_18240)	fghA	3834667..3835518 (+)	852	WP_003092349.1	S-formylglutathione hydrolase	-
FOY90_RS18245 (FOY90_18245)	ispF	3835589..3836062 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FOY90_RS18250 (FOY90_18250)	truD	3836059..3837126 (+)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
FOY90_RS18255 (FOY90_18255)	surE	3837114..3837863 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
FOY90_RS18260 (FOY90_18260)	-	3837896..3838531 (+)	636	WP_073660134.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
FOY90_RS18265 (FOY90_18265)	-	3838577..3839470 (+)	894	WP_003092335.1	peptidoglycan DD-metalloendopeptidase family protein	-
FOY90_RS18270 (FOY90_18270)	rpoS	3839575..3840579 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
FOY90_RS18275 (FOY90_18275)	fdxA	3841006..3841329 (-)	324	WP_003092272.1	ferredoxin FdxA	-
FOY90_RS18280 (FOY90_18280)	mutS	3841396..3843963 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
FOY90_RS18290 (FOY90_18290)	-	3844089..3845096 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=328681 FOY90_RS18270 WP_003113871.1 3839575..3840579(+) (rpoS) [Pseudomonas aeruginosa strain 243931]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=328681 FOY90_RS18270 WP_003113871.1 3839575..3840579(+) (rpoS) [Pseudomonas aeruginosa strain 243931]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTTAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653