Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EGX92_RS00720 Genome accession   NZ_CP034067
Coordinates   7869..8498 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Shigella sonnei strain FDAARGOS_524     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2869..13498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX92_RS00705 (EGX92_00710) helD 3111..5165 (-) 2055 WP_000420537.1 DNA helicase IV -
  EGX92_RS00710 (EGX92_00715) - 5288..5734 (+) 447 WP_001261235.1 YccF domain-containing protein -
  EGX92_RS00715 (EGX92_00720) yccS 5744..7906 (+) 2163 WP_000875023.1 YccS family putative transporter -
  EGX92_RS00720 (EGX92_00725) sxy/tfoX 7869..8498 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EGX92_RS00725 (EGX92_00730) sulA 8717..9226 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  EGX92_RS00730 (EGX92_00735) ompA 9581..10621 (+) 1041 WP_000750416.1 porin OmpA -
  EGX92_RS00735 (EGX92_00740) matP 10697..11149 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  EGX92_RS00740 (EGX92_00745) - 11335..13095 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=328667 EGX92_RS00720 WP_000839153.1 7869..8498(-) (sxy/tfoX) [Shigella sonnei strain FDAARGOS_524]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=328667 EGX92_RS00720 WP_000839153.1 7869..8498(-) (sxy/tfoX) [Shigella sonnei strain FDAARGOS_524]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment