Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   FOY90_RS13390 Genome accession   NZ_CP041772
Coordinates   2827343..2828722 (+) Length   459 a.a.
NCBI ID   WP_143958480.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 243931     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2822343..2833722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOY90_RS13370 (FOY90_13370) - 2823180..2823746 (-) 567 WP_003084491.1 hypothetical protein -
  FOY90_RS13375 (FOY90_13375) rsmD 2823749..2824345 (-) 597 WP_003084492.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  FOY90_RS13380 (FOY90_13380) - 2824345..2825832 (-) 1488 WP_003084496.1 pitrilysin family protein -
  FOY90_RS13385 (FOY90_13385) - 2825825..2827222 (-) 1398 WP_003084498.1 pitrilysin family protein -
  FOY90_RS13390 (FOY90_13390) pilA 2827343..2828722 (+) 1380 WP_143958480.1 signal recognition particle-docking protein FtsY Machinery gene
  FOY90_RS13395 (FOY90_13395) - 2828775..2829970 (+) 1196 WP_100250167.1 IS3-like element ISPpu29 family transposase -
  FOY90_RS13400 (FOY90_13400) ftsE 2830150..2830821 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  FOY90_RS13405 (FOY90_13405) ftsX 2830821..2831828 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  FOY90_RS13410 (FOY90_13410) rpoH 2831942..2832796 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  FOY90_RS13415 (FOY90_13415) - 2832861..2833466 (+) 606 WP_003084511.1 hypothetical protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 48770.20 Da        Isoelectric Point: 4.4941

>NTDB_id=328667 FOY90_RS13390 WP_143958480.1 2827343..2828722(+) (pilA) [Pseudomonas aeruginosa strain 243931]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPTDQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPAEP
PAPVAEAPLAGDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQ
GLSKTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLR
PVEQPLQVDVAREPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGAD
SASVIFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVE
LTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALYSGSTF

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=328667 FOY90_RS13390 WP_143958480.1 2827343..2828722(+) (pilA) [Pseudomonas aeruginosa strain 243931]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTACCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGGCCGAGCCG
CCGGCGCCGGTTGCCGAAGCGCCGCTCGCCGGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGCCCCGAGGCGCC
CGTCGCACAACCCGAGCCTATCCTCGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCG
AGCCCGTTGCGCCGCTGGCCGCCGCTCCGGCAGTCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAG
GGACTGTCCAAGACCAGCGCCAGCATCGGCGAAGGCATGGCCAGCCTGTTCCTCGGCCGCAAGGAAATCGACGACGACCT
GCTCGACGACATCGAGACGCGCCTGCTGACCGCCGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCA
AGCGCGTGGCGCGCAAGGAGCTGGCCGACAGCGGCGCGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGC
CCGGTGGAGCAGCCGTTGCAGGTCGACGTCGCGCGCGAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAA
GACCACCACCATCGGCAAGCTGGCGAAGAAGCTGCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCC
GCGCCGCCGCCGTGGAGCAGTTGCAGGTCTGGGGCGAGCGCAACCGCATCCCGGTGATCGCCCAGCACACTGGCGCCGAC
TCCGCCTCGGTGATCTTCGACGCGGTGCAGGCCGCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACG
CCTGCATACCAAGGACAACCTGATGGAGGAGCTGAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCC
ATGAGGTCCTGCTGGTGCTCGACGCCGGCACCGGGCAGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAG
CTGACCGGCCTGGCCCTGACCAAACTGGACGGCACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCT
GCCGATCCGCTATATCGGTGTCGGCGAGGGGATCGACGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCT
ATAGTGGATCCACCTTTTGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(170-235)

SRP54-type protein, GTPase domain (SRP54)

(255-453)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

54.518

72.331

0.394

Multiple sequence alignment