Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   EH233_RS22425 Genome accession   NZ_CP034058
Coordinates   5307364..5309904 (-) Length   846 a.a.
NCBI ID   WP_228119669.1    Uniprot ID   -
Organism   Anabaena sp. YBS01     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5302364..5314904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EH233_RS22405 (EH233_22310) - 5302947..5304449 (+) 1503 WP_011317379.1 sensor histidine kinase KdpD -
  EH233_RS22410 (EH233_22315) - 5304542..5305111 (-) 570 WP_011317380.1 TIGR02281 family clan AA aspartic protease -
  EH233_RS22415 (EH233_22320) - 5305751..5306587 (-) 837 WP_011317381.1 class I SAM-dependent methyltransferase -
  EH233_RS22420 (EH233_22325) - 5306920..5307123 (+) 204 WP_010995097.1 hypothetical protein -
  EH233_RS22425 (EH233_22330) pilL-C 5307364..5309904 (-) 2541 WP_228119669.1 response regulator Machinery gene
  EH233_RS30010 - 5309861..5310622 (+) 762 WP_228119670.1 hypothetical protein -
  EH233_RS22430 (EH233_22335) - 5310671..5312803 (-) 2133 WP_011317492.1 HlyD family efflux transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 846 a.a.        Molecular weight: 93031.21 Da        Isoelectric Point: 4.3533

>NTDB_id=328639 EH233_RS22425 WP_228119669.1 5307364..5309904(-) (pilL-C) [Anabaena sp. YBS01]
MADDLSALTLDELITENHNFISIAVDDNTLSTSEFSELGLSLTNDENPEDIADSSGLLIDINPATEDVAGVEVENVVSTS
IDIPESVKSDTYIQDDFADLEALLEIEEPTFSADNDSIAGDDFAALEALLGEDNPETALDEPPALAKIIKTTPTVSVTPA
PLADEFSDLEKLLAEADQTISHSSPVKPTVGKTPRTSNRRTARFEETMKVPVKQLDEMSNLVGELVVNRNTLEQDHERLR
QSLDNLLVQVQQLSDVGARMQELYERSLLEASLLASRKTREPVYEVPDANSDRGFSELEMDRFTPFHTLSQEMIELIVRV
RESASDIDFVTEETERVARQFRQVTTQLQEGLTRARMVPFSQTIDRLRRGVRDNAIKFGKQVELVIEGGDTLIDKMILDH
LNDPLTHMLNNAIAHGIETPEIREASGKPPVGTITIRAFHQGNQTVISVGDDGAGIDPERIKAKAVKLGIMTPEQARTIS
RLEIYDLLFQSGFSTKDEADEIAGRGVGMDVVRSEISEIRGAVNTDSTVGKGTTFTIRLPLTLSICKALCCVSDKARIAF
SMDGVEDTLDIPSKNVQHNADGQSFISWRDTVLPFRPLKELLTFNRQLGRGNVYGGTRDDDMISVVVVRSGNTLIALQID
QVLSEQEIVIKQFEGPAPKPIGVAGATVLGDGRIMPIADVLEIIDIFQGRMSKHAGGAPWQQTPPIAIEIPSVKIDPTVL
IVDDSITVRELLSLTFNKAGYRVEQARDGQEAWDKLRSGLPCDIVFCDIEMPRCDGLELLSRIQKDSTLNHLPIAMLTSR
GADKHRQMAIQLGASGYFTKPYLEEALLEAAVRMLKGEKLVSQINA

Nucleotide


Download         Length: 2541 bp        

>NTDB_id=328639 EH233_RS22425 WP_228119669.1 5307364..5309904(-) (pilL-C) [Anabaena sp. YBS01]
TTGGCTGATGATTTATCGGCTTTAACCTTAGATGAGTTAATCACGGAAAATCACAACTTTATAAGTATTGCGGTTGATGA
CAATACCTTATCTACCTCAGAATTTAGCGAATTGGGGTTATCTCTGACAAATGATGAAAATCCAGAAGATATTGCAGATT
CATCAGGGCTTTTAATAGATATAAATCCAGCCACGGAAGATGTAGCCGGGGTTGAAGTAGAGAATGTGGTTTCTACTTCA
ATAGATATCCCAGAATCAGTCAAGTCAGATACTTATATTCAAGATGATTTTGCTGATTTAGAAGCATTGTTAGAAATAGA
AGAACCTACATTCAGTGCTGATAATGACTCCATAGCAGGAGATGATTTTGCTGCTTTAGAAGCACTTCTGGGTGAAGACA
ATCCGGAAACAGCACTGGATGAGCCACCTGCTTTAGCTAAAATCATCAAAACTACTCCTACTGTTTCCGTAACACCAGCG
CCGTTGGCAGATGAATTTAGTGATCTGGAGAAACTTTTAGCAGAAGCAGACCAAACCATCTCCCATTCATCACCAGTCAA
ACCAACGGTAGGAAAAACTCCACGTACTTCTAATCGACGGACTGCGAGATTTGAAGAAACGATGAAAGTGCCGGTCAAGC
AGTTGGATGAAATGAGCAATTTGGTCGGTGAACTAGTAGTCAACCGCAACACCTTAGAGCAGGATCATGAACGACTGCGA
CAATCATTAGATAACTTGCTAGTTCAGGTGCAACAACTCTCAGACGTGGGTGCAAGGATGCAGGAATTATATGAGCGATC
GCTCTTAGAAGCTTCTTTATTAGCTAGTCGCAAAACTAGAGAGCCTGTCTACGAAGTACCGGATGCGAATAGCGATCGCG
GTTTTAGCGAATTAGAAATGGATCGCTTTACTCCCTTCCACACACTGTCTCAGGAAATGATTGAATTGATTGTCAGGGTG
CGGGAGTCAGCGAGTGACATTGATTTCGTCACTGAAGAAACCGAACGAGTAGCCAGACAATTCCGTCAAGTGACCACTCA
ACTGCAAGAAGGTCTGACACGCGCCCGCATGGTGCCATTTTCCCAGACAATTGACCGCTTGCGGCGGGGAGTGCGCGACA
ACGCCATCAAGTTTGGTAAACAGGTGGAATTAGTGATTGAAGGTGGCGATACCCTCATTGACAAGATGATTTTAGATCAT
CTCAATGACCCACTAACCCATATGCTCAACAATGCGATCGCTCACGGTATTGAAACCCCAGAAATTAGGGAAGCATCTGG
CAAACCACCCGTGGGAACCATTACTATCCGCGCCTTTCACCAGGGGAATCAAACTGTAATTTCTGTAGGAGATGACGGTG
CAGGAATTGATCCCGAACGCATCAAAGCCAAAGCAGTGAAGCTGGGGATTATGACACCAGAACAGGCTAGAACTATTTCT
CGCCTGGAAATTTATGACCTACTATTCCAGTCTGGTTTTAGTACCAAAGATGAAGCCGATGAAATTGCTGGTCGTGGTGT
GGGAATGGATGTGGTGCGTTCCGAAATTAGTGAAATTCGCGGGGCGGTAAATACAGATTCTACTGTTGGCAAGGGAACCA
CCTTCACGATTCGTCTACCATTAACCTTGAGTATTTGTAAGGCTCTGTGCTGTGTTTCTGATAAAGCACGGATTGCCTTT
TCAATGGATGGTGTGGAAGATACCCTAGATATACCCAGCAAAAACGTCCAACATAACGCTGATGGACAATCATTCATCTC
TTGGCGGGATACGGTTTTACCTTTCCGACCATTGAAAGAACTGTTAACCTTCAATCGTCAACTCGGTCGCGGTAATGTCT
ACGGTGGTACTAGAGATGATGATATGATTTCCGTCGTCGTTGTGCGATCGGGTAATACTTTAATCGCTCTCCAGATTGAC
CAAGTATTGAGTGAGCAAGAAATTGTTATTAAACAATTTGAAGGCCCAGCACCTAAACCAATAGGTGTAGCAGGGGCTAC
GGTCTTGGGCGATGGTCGCATTATGCCCATTGCTGATGTACTAGAAATTATCGACATCTTCCAAGGACGGATGTCCAAAC
ACGCTGGTGGCGCACCTTGGCAACAAACACCACCAATTGCGATCGAAATCCCATCTGTGAAGATTGACCCAACTGTGCTG
ATTGTAGATGACTCGATCACAGTCCGAGAGTTGTTGTCCCTCACCTTTAATAAAGCGGGTTATCGCGTTGAACAAGCTCG
TGATGGTCAAGAGGCTTGGGACAAACTCCGTTCCGGTCTGCCTTGTGATATCGTCTTCTGCGATATTGAAATGCCCCGTT
GCGACGGACTAGAGTTACTCTCACGTATTCAGAAAGACTCCACCCTTAACCATTTACCCATTGCTATGCTCACCTCAAGA
GGTGCAGATAAACACAGACAGATGGCAATTCAACTCGGTGCTAGTGGATACTTTACTAAGCCTTACCTAGAAGAGGCTTT
ACTAGAAGCCGCAGTGCGGATGTTGAAAGGTGAGAAGTTAGTCAGTCAAATAAACGCTTAA

Domains

Predicted by InterproScan.

CheW-like domain (CheW)

(548-685)

Signal transducing histidine kinase, homodimeric domain (H-kinase_dim)

(206-262)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(403-542)

Response regulator receiver domain (Response_reg)

(719-830)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

61.151

82.151

0.502

Multiple sequence alignment