Detailed information NTG0328474

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: FNS63_RS15325
• Genome accession: NZ_CP041770
• Coordinates: 3109819..3110940 (+)
• Length: 373 a.a.
• NCBI ID: WP_003156660.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain DH8030
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3104819..3115940

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FNS63_RS15305 (FNS63_15300)	-	3105126..3106121 (-)	996	WP_014304282.1	DUF5105 domain-containing protein	-
FNS63_RS15310 (FNS63_15305)	-	3106250..3107650 (+)	1401	WP_024084859.1	YcdB/YcdC domain-containing protein	-
FNS63_RS15315 (FNS63_15310)	-	3107851..3109209 (+)	1359	WP_024084860.1	YcdB/YcdC domain-containing protein	-
FNS63_RS15320 (FNS63_15315)	-	3109206..3109709 (-)	504	WP_015388738.1	M15 family metallopeptidase	-
FNS63_RS15325 (FNS63_15320)	rapF	3109819..3110940 (+)	1122	WP_003156660.1	tetratricopeptide repeat protein	Regulator
FNS63_RS15330 (FNS63_15325)	-	3111056..3111835 (+)	780	WP_015388737.1	glucose 1-dehydrogenase	-
FNS63_RS15335 (FNS63_15330)	-	3111918..3113597 (+)	1680	WP_024084861.1	alpha-glucosidase	-
FNS63_RS15340 (FNS63_15335)	-	3113788..3114747 (+)	960	WP_024084862.1	metal ABC transporter substrate-binding protein	-
FNS63_RS15345 (FNS63_15340)	-	3114802..3115497 (+)	696	WP_003156655.1	metal ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44333.58 Da
• Isoelectric Point: 5.1691

>NTDB_id=328474 FNS63_RS15325 WP_003156660.1 3109819..3110940(+) (rapF) [Bacillus amyloliquefaciens strain DH8030]
MKSKIPSEEVAVKMNEWYKLIRAFEADKAEALKREIQYELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHKKALEYLECALEHAERLDDQYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFRQVIQAVFSLTHIYFKTEKYSEAAASCARGMRSAAEWEDEIYMTKFRLIKELYQGEGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHKRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide

• Length: 1122 bp

>NTDB_id=328474 FNS63_RS15325 WP_003156660.1 3109819..3110940(+) (rapF) [Bacillus amyloliquefaciens strain DH8030]
ATGAAATCCAAGATTCCATCTGAAGAAGTGGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TAAAGCTGAAGCGCTGAAGCGGGAGATTCAATATGAACTCGAAGATATGGAAGAAAATCAGGATTTATTGTTGTATTTTT
CATTGATGGAATTTAGGCACCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGAGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAGCGGGCTGAGGAAAAGCTTGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTCTGTATAAAATTTCTGAGGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TATGCGGGACAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGAAATCTGATGGACGCCCAGCAGCATAAAAAAGCGCTGGAATACCTCGAATGCGCCTTGGAGCACGCGGAGCGGCTTG
ATGATCAATATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTCTGGGTGACTTTTGCAAGGCGGCG
GAGGATTTTGAACGGGCGGCTGCCGGATTTGAAGCACACAGCTTCCGGCAGGTCATCCAGGCTGTTTTTTCACTCACGCA
TATCTACTTTAAAACGGAAAAATACAGTGAAGCCGCCGCCAGCTGCGCGCGGGGCATGAGAAGTGCGGCGGAGTGGGAAG
ATGAGATCTATATGACAAAATTCCGTCTGATTAAAGAGCTTTATCAGGGGGAAGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATCCTGGAATCAAAAGAGCTGTTGGCTGACACAGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATAAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAACTACGCAT
AA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (187-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.588	99.464	0.424
rapC	Bacillus subtilis subsp. subtilis str. 168	40.323	99.732	0.402