Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   FNS63_RS14110 Genome accession   NZ_CP041770
Coordinates   2862371..2862601 (+) Length   76 a.a.
NCBI ID   WP_004264650.1    Uniprot ID   A7Z0H7
Organism   Bacillus amyloliquefaciens strain DH8030     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2857371..2867601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNS63_RS14080 (FNS63_14075) ridA 2857559..2857939 (+) 381 WP_004264663.1 2-iminobutanoate/2-iminopropanoate deaminase -
  FNS63_RS14085 (FNS63_14080) spoVG 2858135..2858428 (+) 294 WP_004264660.1 septation regulator SpoVG -
  FNS63_RS14090 (FNS63_14085) glmU 2858620..2859990 (+) 1371 WP_004264658.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  FNS63_RS14095 (FNS63_14090) - 2860012..2860965 (+) 954 WP_004264656.1 ribose-phosphate diphosphokinase -
  FNS63_RS14100 (FNS63_14095) - 2861050..2861658 (+) 609 WP_004264654.1 50S ribosomal protein L25/general stress protein Ctc -
  FNS63_RS14105 (FNS63_14100) pth 2861743..2862309 (+) 567 WP_024084792.1 aminoacyl-tRNA hydrolase -
  FNS63_RS14110 (FNS63_14105) subA/fin 2862371..2862601 (+) 231 WP_004264650.1 anti-sigma-F factor Fin family protein Machinery gene
  FNS63_RS14115 (FNS63_14110) mfd 2862671..2866204 (+) 3534 WP_024084793.1 transcription-repair coupling factor -
  FNS63_RS14120 (FNS63_14115) spoVT 2866341..2866877 (+) 537 WP_004264646.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8899.87 Da        Isoelectric Point: 5.8002

>NTDB_id=328468 FNS63_RS14110 WP_004264650.1 2862371..2862601(+) (subA/fin) [Bacillus amyloliquefaciens strain DH8030]
MALHYFCRHCGFKVGSLEYSTVPTQSLGFQHLTNEERNDMISYKDNGDVHVLTICEDCQEALERNPHYHEHNTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=328468 FNS63_RS14110 WP_004264650.1 2862371..2862601(+) (subA/fin) [Bacillus amyloliquefaciens strain DH8030]
ATGGCTTTGCATTATTTCTGCCGCCACTGCGGCTTTAAGGTAGGGAGCCTGGAATATTCAACGGTGCCGACACAGTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCATATAAAGACAATGGAGATGTCCATGTTCTTACAA
TTTGTGAAGACTGCCAAGAGGCGCTGGAACGCAATCCGCACTACCATGAACACAACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z0H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

86.842

100

0.868