Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   EGH18_RS11530 Genome accession   NZ_CP034028
Coordinates   1953384..1956485 (-) Length   1033 a.a.
NCBI ID   WP_165865818.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FQ04     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1948384..1961485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH18_RS11505 (EGH18_11505) - 1948403..1949629 (+) 1227 WP_003697786.1 PilT/PilU family type 4a pilus ATPase -
  EGH18_RS11510 (EGH18_11510) yccS 1949746..1951896 (+) 2151 WP_003690198.1 YccS family putative transporter -
  EGH18_RS11520 (EGH18_11520) - 1952448..1952732 (-) 285 WP_071198174.1 GIY-YIG nuclease family protein -
  EGH18_RS11530 (EGH18_11530) pilC 1953384..1956485 (-) 3102 WP_165865818.1 PilC family type IV pilus tip adhesin Machinery gene
  EGH18_RS11540 (EGH18_11540) - 1957177..1957440 (+) 264 WP_017147189.1 hypothetical protein -
  EGH18_RS11545 (EGH18_11545) gnd 1957520..1958968 (+) 1449 WP_003688061.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -
  EGH18_RS11550 (EGH18_11550) waaA 1959031..1960302 (+) 1272 WP_025455875.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  EGH18_RS11555 (EGH18_11555) - 1960343..1960792 (+) 450 WP_003688065.1 CopD family copper resistance protein -

Sequence

Protein


Download         Length: 1033 a.a.        Molecular weight: 112295.36 Da        Isoelectric Point: 9.7466

>NTDB_id=328358 EGH18_RS11530 WP_165865818.1 1953384..1956485(-) (pilC) [Neisseria gonorrhoeae strain FQ04]
MNKTLKRQVFRHTALYAAILMFSHTGGGGGQAQARDYAIVMNGQNQPEVKSNVPSSIRDKDRKREYTHHGYNTGGGSVSF
DNSDELVSQQSGTAVFGTATYLPPYGKVSGFDTDSLKGRANAAGWIRTTRIALAGYSYADVVCRDITGCPKLVYETKFAF
GQQGLQRKGSKLDIYEDKSRDNSPIYKLKDHPWLGVSFNLGSENTVKNSKSLNKLISSFSEGNNNQNIVSTTRDHPISLG
DSQREHTAVAYYLNAKLHLLDKKKIKDITGKTVQLGVLKPSIDVKTQNTGLAGLLNFWSKWDIKDNGQIPVKLGLPEVKA
GRCTNKPNPNNNTKAPSPALTAPALWFGPVQNGKVQMYSASVSTYPDSSSSKIFLQNLSRNDDKNKPGRYSLKSLNDGEI
QSRQPSFNGRQTIIRLDDGVHLIKLNGSKDEVAAFVNLNGNNTGKNDTFGIVKEANVNLDADEWKKVLLPWTVRGPGNDD
KFKSINRESDKYSQRYRIRENGNRDLGDIVNSPIVAVGGYLATAANDGMVHIFKKNGGSDERSYNLKLSYIPGTMPRQYF
DNDTSALKGSTLAQELRTFAEKGYVGDRYGVDGGFVLRQVEDRVFMFGAMGFGGRGAYALDLSKINGNYPAAAPLFDVKD
GDNNGKNRVKVKLGYTVGTPQIGKTQNGKYAAFLASGYAAKDIVSSDNTTALYVYDLKDTLGTPIAKIEVQGGKGGLSSP
TLVDKDLDGIVDIAYAGDRGGNMYRFDLSNSDPNKWSAKAIFEGTKPITSAPAVSRLADKRVVIFGTGSDLSEQDVVGTD
QQYIYGIFDDDKPTVNVKVTNGTGGGLLEQVLSEENKILFLINNKASGGSADKGWVVKLREGERVTVKPTVVLRTAFVTI
RKYNDGGCGAETAILGINTADGGALTPRSARPIVPDHDSVAQYSGHKKTAGGKSVPIGCMWKNGKTVCPNGYVYDKPVNV
RYLDEKKTDDFPVTADGDAGGSGTFKEGKKPARNNRCFSGKGVRTLLMNDLDSLDITGPMCGIKRLSWREVFF

Nucleotide


Download         Length: 3102 bp        

>NTDB_id=328358 EGH18_RS11530 WP_165865818.1 1953384..1956485(-) (pilC) [Neisseria gonorrhoeae strain FQ04]
ATGAATAAAACTTTGAAAAGGCAGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGGGGGGCAGGCGCAAGCCCGTGACTACGCTATTGTCATGAACGGGCAAAACCAGCCCGAGGTAAAGTCGAATGTGC
CATCTTCAATAAGGGACAAAGACAGGAAGCGCGAATATACTCATCATGGGTACAACACAGGAGGAGGCTCTGTCTCATTC
GACAATAGCGATGAGCTTGTTTCTCAACAAAGCGGTACTGCCGTTTTTGGCACAGCCACCTACCTGCCGCCCTACGGCAA
GGTTTCCGGTTTTGATACCGATAGTCTGAAAGGGCGCGCCAATGCCGCCGGTTGGATTCGTACCACCCGCATCGCGCTGG
CAGGCTACAGCTACGCCGATGTCGTATGCAGAGACATCACAGGCTGTCCCAAACTTGTCTATGAGACCAAATTTGCCTTC
GGTCAACAAGGGTTGCAAAGAAAGGGCAGCAAGCTGGATATATACGAAGACAAAAGCCGCGACAATTCGCCCATTTACAA
ATTGAAGGATCATCCCTGGTTGGGCGTGTCTTTCAATTTGGGCAGCGAGAATACCGTCAAAAATAGCAAATCACTCAACA
AATTGATATCTTCTTTTAGTGAAGGCAATAATAATCAAAACATCGTCTCTACGACACGAGACCACCCTATTTCCCTTGGC
GACTCGCAGCGCGAACATACCGCCGTGGCCTATTATCTGAACGCCAAGCTGCACCTGCTGGACAAAAAAAAGATTAAAGA
TATCACCGGCAAAACAGTGCAGTTGGGTGTCTTGAAGCCGAGCATCGATGTGAAGACACAAAATACGGGGCTTGCCGGCT
TGCTAAATTTTTGGTCTAAGTGGGACATTAAAGATAACGGGCAGATTCCGGTCAAGCTCGGCCTGCCGGAAGTCAAAGCC
GGGCGCTGCACCAACAAACCGAACCCCAATAATAATACCAAAGCCCCTTCGCCGGCACTGACCGCCCCCGCGCTGTGGTT
CGGCCCTGTGCAAAATGGCAAGGTGCAGATGTATTCCGCTTCGGTTTCTACCTACCCCGACAGTTCGAGCAGCAAAATTT
TCCTGCAAAACCTTTCCCGCAATGATGACAAAAACAAACCGGGCCGCTATTCCCTCAAATCTTTGAATGATGGTGAGATT
CAAAGTCGACAGCCGAGTTTCAACGGGCGGCAAACAATCATCCGATTGGATGACGGCGTACATTTGATCAAACTGAATGG
AAGCAAGGATGAGGTCGCCGCTTTTGTCAATTTAAATGGAAACAACACCGGCAAAAACGACACTTTCGGCATTGTTAAGG
AAGCGAACGTCAATCTTGACGCCGACGAGTGGAAAAAAGTGCTGCTGCCTTGGACGGTTCGGGGTCCCGGTAATGACGAT
AAATTTAAATCAATTAACCGAGAATCAGACAAATACAGCCAAAGATACCGCATCCGCGAAAACGGCAATCGCGATTTGGG
CGACATCGTCAACAGCCCCATCGTGGCGGTCGGCGGGTATTTGGCAACCGCCGCGAACGACGGGATGGTGCATATCTTCA
AAAAAAACGGCGGCAGTGATGAACGCAGCTACAATCTGAAGCTCAGCTACATCCCCGGCACGATGCCGCGCCAATATTTT
GATAACGACACTTCCGCTCTCAAAGGCTCCACCCTCGCCCAAGAGCTGCGCACCTTTGCCGAAAAAGGCTATGTGGGCGA
CCGCTACGGCGTGGACGGCGGCTTTGTCTTGCGTCAAGTTGAAGACCGCGTGTTTATGTTCGGCGCGATGGGTTTTGGCG
GCAGAGGCGCGTATGCCTTGGATTTAAGCAAAATCAACGGAAATTATCCGGCCGCCGCTCCCCTGTTTGATGTCAAAGAT
GGCGATAATAACGGCAAAAATCGCGTGAAAGTGAAATTAGGCTACACCGTCGGCACGCCGCAAATCGGCAAAACCCAAAA
CGGCAAATACGCCGCCTTCCTCGCCTCCGGTTATGCGGCTAAAGATATTGTCAGCAGCGATAATACAACCGCGCTGTATG
TGTATGATTTGAAAGACACCTTAGGTACGCCGATTGCAAAAATCGAAGTGCAGGGCGGCAAAGGCGGGCTTTCGTCCCCC
ACGCTGGTGGATAAAGATTTGGACGGCATTGTCGATATCGCCTATGCCGGCGACCGGGGCGGCAATATGTACCGCTTTGA
TTTGAGCAATTCCGATCCTAATAAATGGTCTGCAAAGGCTATTTTCGAAGGCACAAAACCGATTACTTCCGCGCCCGCCG
TTTCCCGACTGGCAGACAAACGCGTCGTCATCTTCGGCACGGGCAGCGATTTGAGTGAACAGGATGTAGTCGGTACGGAT
CAACAATATATTTACGGTATCTTTGACGACGATAAGCCGACGGTTAATGTAAAGGTAACAAACGGCACGGGAGGCGGGCT
GCTCGAGCAAGTGCTTAGCGAGGAAAATAAAATCTTGTTCCTGATAAATAATAAGGCATCCGGCGGATCGGCCGATAAAG
GCTGGGTAGTGAAATTGAGGGAAGGAGAACGCGTTACCGTCAAACCGACCGTGGTATTGCGTACCGCCTTCGTAACCATC
CGCAAATATAACGACGGCGGCTGCGGCGCGGAAACCGCCATTTTGGGCATCAATACCGCCGACGGCGGCGCATTGACTCC
GAGAAGCGCGCGCCCGATTGTGCCGGATCACGATTCGGTTGCGCAATATTCCGGCCATAAGAAAACCGCCGGCGGCAAGT
CCGTCCCCATAGGCTGCATGTGGAAAAACGGCAAAACCGTCTGCCCGAACGGATATGTTTACGACAAACCGGTTAATGTG
CGTTATCTGGACGAAAAGAAAACAGACGATTTCCCCGTCACGGCAGACGGTGATGCAGGCGGCAGCGGAACATTCAAAGA
GGGTAAAAAACCCGCCCGCAATAACCGGTGCTTCTCCGGAAAAGGTGTGCGCACCCTGCTGATGAACGATTTGGACAGCT
TGGATATTACCGGCCCGATGTGCGGTATCAAACGCTTAAGCTGGCGCGAAGTCTTCTTCTGA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(506-844)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

69.896

100

0.712

Multiple sequence alignment