Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   FO444_RS09895 Genome accession   NZ_CP041759
Coordinates   1962591..1964369 (+) Length   592 a.a.
NCBI ID   WP_211752906.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain IMAU11823     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1957591..1969369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FO444_RS09875 (FO444_09850) - 1957712..1959385 (-) 1674 WP_010906146.1 polysaccharide biosynthesis protein -
  FO444_RS09880 (FO444_09855) - 1959595..1961046 (+) 1452 WP_003130330.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase -
  FO444_RS09885 (FO444_09860) - 1961125..1961385 (-) 261 WP_017864931.1 hypothetical protein -
  FO444_RS09890 (FO444_09865) adhP 1961406..1962395 (-) 990 WP_240733483.1 alcohol dehydrogenase AdhP -
  FO444_RS09895 (FO444_09870) recQ 1962591..1964369 (+) 1779 WP_211752906.1 DNA helicase RecQ Machinery gene
  FO444_RS09900 (FO444_09875) yjeM 1964405..1965931 (-) 1527 WP_023189054.1 glutamate/gamma-aminobutyrate family transporter YjeM -
  FO444_RS09905 (FO444_09880) pepT 1966211..1967452 (-) 1242 WP_003130321.1 peptidase T -
  FO444_RS09910 (FO444_09885) - 1967481..1968278 (-) 798 WP_017864933.1 DUF1803 domain-containing protein -
  FO444_RS09915 (FO444_09890) - 1968278..1969222 (-) 945 WP_240733484.1 manganese-dependent inorganic pyrophosphatase -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 66927.85 Da        Isoelectric Point: 6.5674

>NTDB_id=328335 FO444_RS09895 WP_211752906.1 1962591..1964369(+) (recQ) [Lactococcus lactis subsp. lactis strain IMAU11823]
MNLEAKLKEIFGYDNFRNGQKQIIEQVLDGQATLGILPTGAGKSICYQLPALIQPGLTLVISPLISLMKDQVDQLNIAGI
PATFINSTLEDSESYQRMRQVENGEIKLLFVAPERFSLDYFNAFLQKLPIDLVAIDEAHCISQWGHDFRPSYVDFASHLQ
YLPTNPTVLALTATATPKVADDIQKLLSISPSHTIKTGFLRENLRFEVVKGMDKRTFLKNYLKNQESEAAGIIYASTRKE
VEEICEWLNHNHFKSVRYHAGLSEQERQINQELFLFDEVPIMVATNAFGMGINKPNVRFVIHYALPATIESYYQEAGRAG
RDGLESDAILLFSPNDLRIRNFLIEQGEGDEAHKEHEYEKLRQMRAYTSAETCLQRYILQYFGDEGEDCKKCSNCLDERE
LLDITIDAQKALSCVVRMGERFGKTAVAQVLIGSKNKNIAKWNFESLSTFGIMKNHSQKTVGELIDFLSAESYLNITSGK
FPLLLLSAQGLKVLKGQIKVYRKASLIIESKTKISHHFDEECFASIRALRLELAKEEGVPPFMIFSDSALKEMAQVLPDS
QSQFLQISGVGPVKLKKYGRLFIDKISEYKKS

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=328335 FO444_RS09895 WP_211752906.1 1962591..1964369(+) (recQ) [Lactococcus lactis subsp. lactis strain IMAU11823]
ATGAATTTAGAAGCTAAATTAAAAGAAATTTTTGGTTATGACAATTTCCGAAATGGTCAGAAACAAATTATTGAACAAGT
CCTAGATGGACAAGCCACTCTTGGTATTTTACCCACAGGAGCTGGAAAATCAATCTGCTATCAGTTACCAGCTCTTATTC
AACCAGGGCTTACTCTCGTAATCTCCCCACTTATTAGCTTGATGAAAGATCAAGTCGACCAGCTGAATATTGCCGGAATT
CCAGCAACATTTATTAACTCTACCTTAGAGGATTCCGAATCTTATCAAAGAATGCGACAGGTTGAAAATGGCGAAATCAA
GCTTCTTTTTGTAGCACCAGAGCGTTTTTCATTAGACTATTTCAATGCCTTTTTACAAAAACTTCCAATTGATTTAGTTG
CCATAGACGAAGCACACTGCATTTCACAATGGGGGCACGATTTCAGACCCAGTTATGTCGATTTTGCCTCTCATCTCCAA
TATTTACCAACAAATCCTACCGTCTTAGCCCTTACGGCTACTGCGACACCAAAAGTTGCAGATGATATTCAAAAACTTCT
TTCAATTTCCCCCAGTCATACTATTAAAACCGGTTTTCTTAGAGAAAACTTACGTTTTGAAGTAGTCAAAGGGATGGATA
AGAGAACTTTTCTTAAAAATTATCTTAAAAATCAAGAAAGTGAGGCTGCTGGAATTATCTATGCCAGCACTCGTAAAGAA
GTTGAAGAAATTTGTGAATGGCTCAACCATAATCATTTCAAATCCGTTCGTTACCATGCTGGACTGAGCGAACAGGAACG
TCAAATAAATCAAGAACTTTTTCTCTTTGACGAAGTACCGATAATGGTTGCCACTAATGCTTTTGGCATGGGAATCAATA
AACCAAATGTTCGATTTGTGATTCATTATGCCCTTCCCGCAACAATTGAAAGTTATTATCAAGAAGCTGGGCGAGCAGGA
CGGGACGGGCTTGAATCTGATGCTATCCTCCTTTTTTCACCAAATGATTTACGAATTCGTAATTTCTTGATTGAGCAAGG
TGAAGGTGATGAAGCGCACAAGGAACATGAATACGAAAAGCTTCGACAAATGCGAGCATACACAAGTGCCGAAACCTGTT
TGCAACGCTATATTTTACAGTATTTTGGTGATGAAGGTGAAGATTGTAAAAAGTGTAGTAATTGTCTTGATGAAAGAGAA
CTTCTTGATATTACAATCGATGCTCAAAAAGCCCTATCTTGTGTCGTCCGAATGGGTGAACGTTTTGGTAAGACGGCCGT
AGCACAAGTTTTGATTGGTTCTAAAAATAAAAATATTGCCAAATGGAATTTTGAATCTCTATCGACTTTTGGAATTATGA
AAAACCATTCCCAAAAGACCGTGGGTGAATTAATCGATTTTCTATCTGCTGAAAGTTATTTAAACATTACATCAGGTAAA
TTCCCACTTCTCCTTCTTTCAGCCCAAGGATTAAAAGTCCTCAAAGGACAAATCAAAGTTTATCGCAAAGCTAGCCTAAT
TATTGAATCGAAAACAAAAATTTCTCATCATTTTGATGAAGAATGTTTTGCAAGTATTCGTGCACTTCGACTTGAACTAG
CCAAGGAAGAAGGCGTCCCTCCTTTCATGATTTTTTCTGATAGTGCCCTTAAAGAAATGGCTCAAGTTCTGCCGGATAGT
CAAAGTCAATTTTTACAAATTTCTGGTGTCGGACCTGTTAAACTCAAAAAATATGGAAGGCTTTTTATCGACAAAATATC
TGAATATAAAAAAAGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(19-179)

HRDC domain (HRDC)

(520-584)

RecQ zinc-binding (RecQ_Zn_bind)

(335-396)

Helicase conserved C-terminal domain (Helicase_C)

(214-322)

RQC domain (RQC)

(399-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

50.767

99.155

0.503