Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   DTPSY_RS01670 Genome accession   NC_011992
Coordinates   346044..347621 (+) Length   525 a.a.
NCBI ID   WP_012655407.1    Uniprot ID   A0A9J9QCU2
Organism   [Acidovorax] ebreus TPSY     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 341044..352621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DTPSY_RS01645 (Dtpsy_0332) argS 341331..343034 (+) 1704 WP_012655403.1 arginine--tRNA ligase -
  DTPSY_RS01650 (Dtpsy_0333) - 343047..343673 (+) 627 WP_012655404.1 SPOR domain-containing protein -
  DTPSY_RS01655 (Dtpsy_0334) - 343732..344382 (+) 651 WP_011803808.1 thiol:disulfide interchange protein DsbA/DsbL -
  DTPSY_RS01660 (Dtpsy_0335) lptA 344556..345215 (+) 660 WP_041838776.1 lipopolysaccharide transport periplasmic protein LptA -
  DTPSY_RS01665 (Dtpsy_0336) lptB 345239..345991 (+) 753 WP_012655406.1 LPS export ABC transporter ATP-binding protein -
  DTPSY_RS01670 (Dtpsy_0337) rpoN/rpoN1 346044..347621 (+) 1578 WP_012655407.1 RNA polymerase factor sigma-54 Machinery gene
  DTPSY_RS01675 (Dtpsy_0338) - 347625..348068 (+) 444 WP_012655408.1 thioesterase family protein -
  DTPSY_RS01680 (Dtpsy_0339) - 348065..349378 (+) 1314 WP_012655409.1 THUMP domain-containing protein -
  DTPSY_RS01685 (Dtpsy_0340) - 349368..349853 (+) 486 WP_012655410.1 putative toxin-antitoxin system toxin component, PIN family -
  DTPSY_RS01690 (Dtpsy_0341) - 349841..351142 (+) 1302 WP_011803815.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DTPSY_RS01695 (Dtpsy_0342) - 351624..352454 (+) 831 WP_011803816.1 YecA family protein -

Sequence

Protein


Download         Length: 525 a.a.        Molecular weight: 57421.48 Da        Isoelectric Point: 4.5772

>NTDB_id=32828 DTPSY_RS01670 WP_012655407.1 346044..347621(+) (rpoN/rpoN1) [[Acidovorax] ebreus TPSY]
MKPGLSLRVSQHLALTPQLQQSIRLLQLSTLELAQEVEQMLDENPFLERTLEEAPREEFGLAQADAPVSEQDREAEDAIY
SGAVSAGQESATSQNDAETSSAESTAEPADWEGDGSVDLAPDDSEWGGDAPARNGAGAGSDDEVDATELARSQESLTAFL
HRQALALRLSELDMAALRFLIESLNDDGYLDESLQDLAASLAGTEDPEQLDELVHRFTVALRLLQSLEPAGVGARGLAEC
LTLQLRAMDQDEEGDPDVIQAALAICGQPLDLLAKRDVRRLAQACGTSEERTRAAMALIARLEPRPGRRFADVDRNIIVP
DVIVKKTGRGGQQNFSVQLNPDVMPRLRVHDIYAGALRGGRGEGHQALQARLQEARWFIKNIQQRFDTILRVSRAIVERQ
KNFFVHGELAMRPLVLRDIADELGLHESTISRVTTAKYMATPQGTYELKYFFGSGLGTETGGNASSTAVRALIKQFIAAE
NPHKPLSDSQIAEMLKEQGIECARRTVAKYREALKIAPANLRKAL

Nucleotide


Download         Length: 1578 bp        

>NTDB_id=32828 DTPSY_RS01670 WP_012655407.1 346044..347621(+) (rpoN/rpoN1) [[Acidovorax] ebreus TPSY]
ATGAAGCCCGGCCTGTCGCTGCGCGTCTCGCAGCACCTGGCGCTCACACCGCAGTTGCAGCAGTCGATCCGCCTGCTGCA
GCTGTCCACGCTGGAGCTGGCCCAGGAGGTCGAGCAAATGCTCGACGAGAACCCCTTCCTGGAGCGCACGCTGGAAGAGG
CCCCGCGCGAGGAGTTCGGCCTGGCCCAGGCCGATGCACCGGTGAGCGAGCAAGACCGCGAAGCCGAAGATGCTATTTAT
TCAGGAGCTGTCAGCGCAGGACAGGAAAGCGCTACAAGCCAAAATGATGCAGAAACCTCCTCCGCCGAATCCACGGCCGA
ACCCGCGGACTGGGAAGGCGACGGCTCGGTAGACCTGGCGCCCGACGACAGCGAGTGGGGCGGCGACGCCCCGGCACGCA
ACGGTGCCGGCGCGGGGAGCGACGACGAGGTGGACGCCACCGAGCTGGCCCGCAGCCAGGAGTCGCTCACGGCCTTCCTG
CACCGCCAGGCGCTGGCGCTGCGCCTGTCCGAGCTGGACATGGCCGCGCTGCGCTTCCTCATCGAATCGCTGAACGACGA
CGGCTACCTGGACGAGTCGCTGCAGGACCTGGCCGCCAGCCTGGCGGGCACCGAAGACCCCGAGCAACTCGATGAACTGG
TGCACCGTTTCACCGTGGCGCTGCGCCTGCTGCAAAGCCTGGAACCCGCGGGCGTGGGCGCGCGCGGCCTGGCCGAATGC
CTCACGCTGCAGCTGCGCGCGATGGACCAGGACGAAGAGGGCGACCCCGACGTGATCCAGGCCGCGCTGGCCATCTGCGG
CCAGCCACTGGACCTGCTGGCCAAGCGCGACGTGCGCCGCCTGGCGCAGGCCTGCGGCACCAGCGAAGAGCGCACGCGCG
CCGCGATGGCCTTGATCGCGCGGCTGGAGCCACGCCCGGGCAGGCGCTTTGCCGACGTGGACCGCAACATCATCGTGCCC
GACGTGATCGTCAAGAAAACCGGCCGCGGCGGACAGCAGAACTTCAGCGTGCAGCTCAACCCGGACGTGATGCCGCGTCT
GCGTGTGCACGACATCTACGCCGGCGCGTTGCGCGGCGGCCGTGGCGAAGGCCACCAGGCGCTGCAGGCACGGCTGCAGG
AGGCGCGCTGGTTCATCAAGAACATCCAGCAGCGTTTTGACACCATCCTGCGCGTGTCGCGCGCCATCGTGGAGCGGCAG
AAGAACTTCTTCGTGCATGGCGAACTGGCCATGCGCCCGCTGGTGCTGCGCGACATTGCCGATGAACTGGGCCTGCACGA
GTCCACCATCAGCCGCGTGACCACCGCCAAGTACATGGCCACGCCGCAAGGCACCTACGAACTCAAGTATTTCTTCGGCT
CGGGGCTGGGCACCGAAACCGGCGGCAACGCCTCCAGCACGGCCGTGCGCGCGCTCATCAAGCAGTTCATCGCGGCCGAG
AACCCGCACAAGCCGCTGTCGGACAGCCAGATCGCCGAGATGCTCAAGGAGCAGGGCATTGAATGTGCGCGCCGCACCGT
GGCCAAATACCGTGAGGCGCTCAAGATCGCCCCGGCCAACCTCCGCAAGGCACTTTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(367-523)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(147-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

52.471

100

0.526

Multiple sequence alignment