Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   SP670_RS05495 Genome accession   NC_014498
Coordinates   1034665..1035735 (-) Length   356 a.a.
NCBI ID   WP_000817885.1    Uniprot ID   -
Organism   Streptococcus pneumoniae 670-6B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1029665..1040735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP670_RS05480 (SP670_1110) - 1030747..1031790 (+) 1044 WP_000752698.1 dihydrolipoamide acetyltransferase -
  SP670_RS05485 (SP670_1111) lpdA 1031836..1033539 (+) 1704 WP_001162941.1 dihydrolipoyl dehydrogenase -
  SP670_RS05490 (SP670_1112) - 1033603..1034592 (+) 990 WP_000873987.1 lipoate--protein ligase -
  SP670_RS05495 (SP670_1113) xerS 1034665..1035735 (-) 1071 WP_000817885.1 tyrosine recombinase XerS Machinery gene
  SP670_RS05500 (SP670_1114) - 1036319..1037869 (-) 1551 WP_000392546.1 ClC family H(+)/Cl(-) exchange transporter -
  SP670_RS05505 (SP670_1115) - 1037885..1038664 (-) 780 WP_000201121.1 ribonuclease HII -
  SP670_RS05510 (SP670_1116) ylqF 1038651..1039502 (-) 852 WP_000201317.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41170.23 Da        Isoelectric Point: 9.6949

>NTDB_id=32819 SP670_RS05495 WP_000817885.1 1034665..1035735(-) (xerS) [Streptococcus pneumoniae 670-6B]
MKREILLERIDKLKQLMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVINVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=32819 SP670_RS05495 WP_000817885.1 1034665..1035735(-) (xerS) [Streptococcus pneumoniae 670-6B]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAACTCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAGCTGGCTGTGCCCTACAGTTTTACAACCCTGTACGAATACCTTAAGGAATATGACCGATTTTTCAGCTGGGTTTTGG
AGTCTGGTATTTCAAACGCTGATAAAATATCCGATATTCCTTTATCAGTTTTGGAAAATATGTCTAAGAAAGACATGGAA
TCCTTTATCCTTTATCTACGTGAACGTCCCTTGCTGAATGCTAATACAACAAAACAAGGTGTTTCACAGACAACTATCAA
TCGAACCTTATCAGCACTTTCTAGTCTTTACAAGTATCTAACCGAGGAGGTTGAAAACGATCAGGGGGAACCTTATTTCT
ATCGTAATGTAATGAAAAAAGTTTCAACCAAGAAAAAGAAAGAAACCCTTGCTGCCAGAGCTGAAAATATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGAAGGTTTTCTAACTTATATCGATCAAGAGCACCCACAACAGCTTTCAAATCGAGCTCT
CTCATCATTCAACAAAAATAAAGAACGAGATTTAGCCATTATTGCCCTTCTCTTGGCATCTGGTGTTCGCTTATCTGAAG
CTGTTAATCTAGATCTAAGAGATCTCAATCTAAAAATGATGGTTATTAATGTTACTCGAAAAGGTGGCAAACGTGACTCA
GTCAATGTCGCTGCTTTTGCTAAACCTTATTTAGAGAATTATCTGGCCATTCGGAATCAACGCTATAAAACGGAAAAAAC
AGATACAGCCCTTTTTTTAACTCTCTACAGAGGTGTTCCTAATCGTATCGATGCTTCTAGCGTTGAGAAAATGGTTGCTA
AATACTCAGAGGATTTTAAAGTACGTGTAACACCCCATAAACTGCGCCATACGCTAGCAACTAGGCTCTATGATGCGACT
AAATCACAAGTTTTAGTCAGTCACCAACTAGGACATGCCAGCACACAAGTCACTGACCTCTATACCCATATTGTTAATGA
TGAACAAAAGAATGCTCTAGATAGTTTATGA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(71-123)

Phage integrase family (Phage_integrase)

(188-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

99.719

100

0.997

Multiple sequence alignment