Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   EGH13_RS00330 Genome accession   NZ_CP034022
Coordinates   53005..56121 (-) Length   1038 a.a.
NCBI ID   WP_124693343.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FQ36     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 48005..61121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH13_RS00300 (EGH13_00300) - 49541..49930 (-) 390 WP_003687278.1 endonuclease domain-containing protein -
  EGH13_RS14025 - 50093..50260 (-) 168 WP_229685202.1 glyoxalase -
  EGH13_RS00305 (EGH13_00305) - 50188..50472 (-) 285 WP_229685201.1 VOC family protein -
  EGH13_RS00310 (EGH13_00310) carA 50526..51659 (-) 1134 WP_003700860.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -
  EGH13_RS00330 (EGH13_00330) pilC 53005..56121 (-) 3117 WP_124693343.1 PilC family type IV pilus tip adhesin Machinery gene
  EGH13_RS00360 (EGH13_00360) apbC 58221..59300 (-) 1080 WP_047918675.1 iron-sulfur cluster carrier protein ApbC -
  EGH13_RS00370 (EGH13_00370) - 59667..60176 (+) 510 WP_003696651.1 protein disulfide oxidoreductase -
  EGH13_RS00380 (EGH13_00380) nadR 60517..60957 (+) 441 WP_003687296.1 MarR family adhesin repressor NadR -

Sequence

Protein


Download         Length: 1038 a.a.        Molecular weight: 113629.90 Da        Isoelectric Point: 9.9976

>NTDB_id=328169 EGH13_RS00330 WP_124693343.1 53005..56121(-) (pilC) [Neisseria gonorrhoeae strain FQ36]
MNKTLKRRVFRHTALYAAILMFSHTGGGGAMAQTSNYAIIMNERKQPEVKWEGQYNQSALKDKSRERTFSHTSQRNSLGR
TSNFISFNNNDTLVSQQSGTAVFGTATYLPPYGKVSGFDTAELNKRGNAVNWIRTTRVGLAGYAYTGIRCGHARDCPKLT
YKTQFSFDNPDLAKTGDRLDRHTEPSRDNSPIYKLKDYPWLGVSFNLGAEGTAKDGRSSSRLISSFNEKNSNNNLVYTTE
GRDISLGNWQSESTAVAYYLNAKLHLLDKKEIKDITGKTVRLGVLKPSIDVKTQNTGFAGLLNFWSKWDIKDNGQIPVKL
GLQVKAGRCINKPNPNKNTKAPSPALTAPALWFGPRQDGKVQMYSASVSTYPDSSSSKIFLQNLSRNDDKNKPGRYSLKP
LSENEIKSKEPRFNGRQTVIRLDSGVQLIKLNGSKDEVVIFGNNGNNGTFGIVKEANVNLEADEWKKVLLPWTVRGPDND
NKFKLINQKPDRYSQRYRIRENGNRDLGDIVNSPIVAVGGYLATSANDGMVHIFKKTGTDERSYNLKLSYIPGTMERKDI
EGNDSDLAKELRTFAEKGYVGDRYGVDGGFVLRQVNLNGQDRVFMFGAMGLGGRGAYALDLSKINENYPAAAPLFDVKNG
DKNGKNGKNGKNRVEVELGYTVGTPQIGKTRSGKYAAFLASGYAAKDIGSGDNKTALYVYDLNNTLGTPIAKIEVKDGKG
GLSSPTLVDKDLDGTVDIAYAGDRGGNMYRFDLSNSDPNKWSVRTIFEGTKPITSAPAVSRLKDKRVVIFGTGSDLTEDD
VLDTKEQYIYGIFDDDKAANNVNASRGVLGSGLLEQHLTQENKTLFLNKRSDGSGSKGWAVKLTGGRRVTVKPTVVLRTA
FVTIRKYKDDGCGAETAILGINTADGGALTPRSARPIVPEANTAVAQYSGHKKTAGGKSVPIGCMEKGGKTVCPNGYVYD
KPVNVRYLDETETDGFSTTADGDAGGSGIDPAGRRPGKNNRCFSKKGVRTLLMNDLDSLDITGPMCGIKRLSWREVFF

Nucleotide


Download         Length: 3117 bp        

>NTDB_id=328169 EGH13_RS00330 WP_124693343.1 53005..56121(-) (pilC) [Neisseria gonorrhoeae strain FQ36]
ATGAATAAAACTTTAAAAAGGCGGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGGGGCGATGGCGCAAACCAGTAACTACGCTATTATCATGAACGAGCGAAAGCAGCCCGAGGTAAAGTGGGAGGGTC
AATATAATCAATCAGCATTAAAGGACAAAAGCAGGGAGCGGACATTTAGCCATACGAGCCAGAGAAACAGCCTCGGCAGG
ACAAGCAATTTTATCTCATTCAACAATAACGATACCCTTGTTTCTCAACAAAGCGGTACTGCCGTTTTTGGCACAGCCAC
CTACCTGCCGCCCTACGGCAAGGTTTCCGGCTTTGATACCGCCGAGCTGAACAAGCGCGGCAATGCCGTCAATTGGATTC
GTACCACCCGGGTCGGGCTGGCAGGCTACGCCTACACCGGTATCCGTTGCGGACATGCCCGAGACTGTCCCAAACTTACC
TATAAAACCCAATTTTCCTTCGATAATCCCGACTTGGCAAAAACAGGAGACAGGCTGGATAGGCACACAGAGCCAAGCCG
CGACAATTCGCCCATTTACAAATTGAAGGATTATCCATGGTTGGGCGTGTCTTTCAATTTGGGCGCCGAGGGTACCGCCA
AAGATGGCAGATCATCCAGCAGATTGATATCTTCTTTTAATGAAAAGAATAGTAATAACAACCTCGTCTATACCACGGAA
GGCCGCGATATTTCCTTGGGCAACTGGCAGAGCGAAAGTACCGCCGTGGCCTATTATCTGAACGCCAAGCTGCACCTGCT
GGACAAAAAAGAGATTAAAGATATCACCGGCAAAACAGTGCGGTTGGGTGTCTTGAAGCCGAGCATCGATGTGAAGACAC
AAAATACGGGGTTTGCCGGCTTGCTAAATTTTTGGTCTAAGTGGGACATTAAAGATAACGGGCAGATTCCGGTCAAGCTC
GGCCTGCAAGTCAAAGCAGGCCGCTGCATCAATAAACCGAACCCCAATAAGAATACCAAAGCCCCTTCGCCGGCACTGAC
CGCCCCCGCGCTGTGGTTCGGACCTAGGCAAGATGGTAAGGTGCAGATGTATTCCGCTTCGGTTTCCACCTACCCCGACA
GTTCGAGCAGCAAAATTTTCCTGCAAAACCTTTCCCGCAATGATGACAAAAACAAACCGGGCCGCTATTCCCTCAAACCC
TTGAGTGAGAATGAGATTAAAAGTAAAGAGCCGCGTTTCAACGGAAGGCAGACCGTCATCCGATTGGATAGCGGCGTACA
GCTGATCAAACTGAATGGAAGCAAGGATGAGGTCGTCATTTTTGGAAACAACGGCAACAACGGCACTTTCGGCATTGTTA
AGGAAGCGAACGTCAATCTTGAAGCCGACGAGTGGAAAAAAGTGCTGCTGCCTTGGACGGTTCGGGGTCCCGATAATGAC
AATAAATTTAAATTAATTAACCAAAAACCAGACAGATACAGCCAAAGATACCGCATCCGCGAAAACGGCAATCGCGATTT
GGGCGACATCGTCAACAGCCCGATTGTCGCGGTCGGCGGGTATCTGGCAACTTCTGCCAACGACGGGATGGTGCATATCT
TCAAAAAAACCGGCACGGATGAACGCAGCTACAATCTGAAGCTCAGCTACATCCCCGGTACGATGGAGCGTAAGGATATT
GAAGGCAATGACTCCGACCTCGCCAAAGAGCTGCGCACCTTTGCCGAAAAAGGCTATGTGGGCGACCGCTACGGCGTGGA
CGGCGGCTTTGTCTTGCGTCAAGTTAACTTAAACGGACAAGACCGCGTGTTTATGTTCGGCGCAATGGGCCTTGGCGGCA
GAGGCGCATACGCCTTGGATTTAAGCAAAATCAACGAAAATTATCCAGCCGCCGCTCCCCTGTTTGATGTCAAAAATGGC
GATAAAAACGGCAAAAACGGCAAAAACGGCAAAAATCGCGTGGAAGTGGAATTAGGCTACACCGTCGGTACGCCGCAAAT
CGGCAAAACCCGCAGCGGCAAATACGCCGCCTTCCTCGCTTCCGGTTATGCGGCTAAAGATATTGGCAGCGGCGATAATA
AAACCGCGCTGTATGTATATGATTTGAACAACACCTTAGGTACGCCGATTGCAAAAATCGAAGTGAAGGACGGCAAAGGC
GGGCTTTCGTCCCCCACGCTGGTGGATAAAGATTTGGACGGCACGGTCGATATCGCCTATGCCGGCGACCGGGGCGGCAA
TATGTACCGCTTTGATTTGAGCAATTCCGATCCTAATAAATGGTCTGTAAGGACTATTTTCGAAGGCACAAAACCGATTA
CCTCCGCGCCCGCCGTTTCCCGACTGAAAGACAAACGCGTCGTCATCTTCGGTACGGGCAGCGATTTGACCGAAGATGAT
GTACTCGATACGAAAGAACAATATATTTACGGTATCTTTGACGACGATAAGGCGGCGAATAATGTAAATGCAAGCCGCGG
CGTTTTGGGGAGCGGGCTGCTCGAGCAACACCTTACTCAGGAAAATAAAACATTATTCCTGAACAAGAGATCCGACGGTT
CGGGCAGCAAGGGCTGGGCGGTGAAATTGACAGGCGGACGGCGCGTTACCGTCAAACCGACCGTGGTATTGCGTACCGCC
TTCGTAACCATCCGCAAATATAAAGACGACGGCTGCGGCGCGGAAACCGCCATTTTGGGCATCAATACCGCCGACGGCGG
CGCATTGACTCCGAGAAGCGCGCGCCCGATTGTGCCGGAAGCCAATACGGCTGTCGCACAATATTCCGGCCATAAGAAAA
CCGCCGGCGGCAAGTCCGTCCCTATAGGTTGTATGGAAAAAGGCGGTAAAACCGTCTGCCCGAACGGATATGTTTACGAC
AAGCCGGTTAATGTGCGTTATCTGGATGAAACGGAAACAGACGGATTTTCAACGACGGCGGACGGCGATGCGGGCGGCAG
CGGTATAGACCCCGCCGGCAGGCGTCCCGGCAAAAACAACCGCTGCTTCTCCAAAAAAGGTGTGCGCACCCTGCTGATGA
ACGATTTGGACAGCTTGGATATTACCGGCCCGATGTGCGGTATCAAACGCTTAAGCTGGCGCGAAGTCTTCTTCTGA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(507-848)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

71.429

100

0.727

Multiple sequence alignment