Detailed information NTG0328112

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: FGF55_RS18040
• Genome accession: NZ_CP041691
• Coordinates: 3634232..3635362 (-)
• Length: 376 a.a.
• NCBI ID: WP_014419093.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain ZJU1
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3629232..3640362

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FGF55_RS18010 (FGF55_18010)	-	3630075..3630479 (-)	405	WP_014419089.1	Rrf2 family transcriptional regulator	-
FGF55_RS18015 (FGF55_18015)	ureC	3630621..3632330 (-)	1710	WP_014419090.1	urease subunit alpha	-
FGF55_RS18020 (FGF55_18020)	ureB	3632327..3632701 (-)	375	WP_003151199.1	urease subunit beta	-
FGF55_RS18025 (FGF55_18025)	ureA	3632698..3633015 (-)	318	WP_014419091.1	urease subunit gamma	-
FGF55_RS18030 (FGF55_18030)	-	3633369..3633557 (-)	189	WP_032863869.1	CsbD family protein	-
FGF55_RS18035 (FGF55_18035)	-	3633632..3634111 (-)	480	WP_007407583.1	hypothetical protein	-
FGF55_RS18040 (FGF55_18040)	rapC	3634232..3635362 (-)	1131	WP_014419093.1	tetratricopeptide repeat protein	Regulator
FGF55_RS18045 (FGF55_18045)	moaA	3635553..3636578 (-)	1026	WP_014419094.1	GTP 3',8-cyclase MoaA	-
FGF55_RS18050 (FGF55_18050)	fdhD	3636596..3637384 (-)	789	WP_014419095.1	formate dehydrogenase accessory sulfurtransferase FdhD	-
FGF55_RS20410	-	3637479..3637643 (-)	165	WP_007407587.1	hypothetical protein	-
FGF55_RS18055 (FGF55_18055)	-	3637730..3638410 (-)	681	WP_012118657.1	VWA domain-containing protein	-
FGF55_RS18060 (FGF55_18060)	-	3638720..3639406 (-)	687	WP_007407590.1	VWA domain-containing protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44815.93 Da
• Isoelectric Point: 5.4443

>NTDB_id=328112 FGF55_RS18040 WP_014419093.1 3634232..3635362(-) (rapC) [Bacillus amyloliquefaciens strain ZJU1]
MTAYEIPSSQVGVKINKWYKHILAFQAADAIKLKEEIDEDIQRMEEDQLLLLYYQLISYRHHIMLDYVKPECTEQSQIQY
SELQKTIESTDSISGLSEYYFHLFRGMYEFDHNNYVAAISFYRKAEKLLSFVEDDIERAEFHFKMSEVFYVMKQTHFSMN
HGIQALDTYMKHDFYRVRRIQCHFVISGNYIDCKNYGKALEHLDEALRLSLLEGQPRLIGSSLYNLGNCYSEKRDLDEAA
RYFRKAVPVFEEHQLEQLPKALFSLTHTLFRLHDDQAALTYYERGVMIAKERGDRFSLEKYKFLQALYLESLNMDLIYEV
FDYMNEKSLYVYIEDFALEAAVYTSGHGQYKEAAYFYEKAIRMRENIQKEQCLYDI

Nucleotide

• Length: 1131 bp

>NTDB_id=328112 FGF55_RS18040 WP_014419093.1 3634232..3635362(-) (rapC) [Bacillus amyloliquefaciens strain ZJU1]
ATGACCGCATACGAGATTCCGTCATCTCAAGTTGGAGTTAAGATCAACAAATGGTACAAGCACATTTTAGCGTTTCAAGC
GGCTGATGCCATAAAGCTGAAAGAGGAAATTGATGAGGATATACAACGTATGGAGGAAGACCAGCTGCTGCTGTTATATT
ATCAGCTGATCAGCTACCGCCATCATATTATGCTTGATTACGTCAAGCCGGAATGCACCGAACAATCACAGATTCAGTAC
AGCGAGCTGCAAAAGACGATCGAAAGCACGGACAGCATATCGGGACTGTCTGAGTATTATTTCCATTTGTTCAGAGGGAT
GTATGAATTCGATCACAATAACTATGTTGCGGCTATTTCTTTTTACCGGAAAGCGGAAAAACTCCTTTCATTTGTCGAGG
ATGATATAGAGAGGGCGGAATTCCATTTCAAGATGTCTGAAGTGTTTTATGTCATGAAGCAGACTCATTTTTCCATGAAT
CACGGGATTCAGGCGCTGGATACGTATATGAAACACGATTTCTACAGAGTGCGGAGAATTCAATGCCATTTCGTCATCTC
AGGAAACTACATCGACTGCAAAAACTACGGCAAAGCGCTTGAGCATTTAGACGAAGCCCTCCGCCTTTCTTTGCTTGAAG
GACAGCCCCGCCTGATCGGGTCTTCGCTTTACAATCTGGGGAATTGTTATTCTGAAAAGCGCGATCTGGATGAAGCGGCC
CGGTACTTTAGAAAAGCGGTTCCCGTTTTTGAAGAGCATCAGCTTGAACAGCTTCCGAAGGCGCTGTTCAGCTTAACGCA
CACCCTTTTCAGGCTGCATGATGACCAAGCGGCCCTTACCTATTATGAAAGAGGGGTCATGATCGCGAAAGAACGGGGCG
ACCGATTCAGTTTAGAGAAGTATAAGTTTTTACAAGCGCTTTATTTGGAGTCACTCAATATGGATTTAATCTATGAAGTG
TTTGACTATATGAATGAAAAATCGCTGTATGTGTATATTGAAGATTTCGCCTTGGAGGCCGCCGTTTACACAAGCGGACA
TGGGCAATATAAAGAAGCGGCGTATTTTTATGAAAAAGCGATTCGCATGAGAGAAAACATTCAAAAAGAACAGTGTTTAT
ACGATATATAA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

• Tetratricopeptide repeat (TPR_12) (192-251)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	41.842	100	0.423
rapF	Bacillus subtilis subsp. subtilis str. 168	40	99.734	0.399