Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GEOB_RS18465 Genome accession   NC_011979
Coordinates   4121942..4123288 (-) Length   448 a.a.
NCBI ID   WP_012648768.1    Uniprot ID   -
Organism   Geotalea daltonii FRC-32     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4116942..4128288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GEOB_RS18440 (Geob_3699) - 4117274..4117672 (+) 399 WP_012648764.1 response regulator -
  GEOB_RS18445 (Geob_3700) - 4117825..4118973 (+) 1149 WP_083767181.1 ATP-binding protein -
  GEOB_RS20745 - 4119223..4119387 (+) 165 WP_407638390.1 CcdB family protein -
  GEOB_RS18455 (Geob_3701) - 4119604..4121430 (-) 1827 WP_012648766.1 ATP-binding protein -
  GEOB_RS18460 (Geob_3702) dksA 4121488..4121844 (-) 357 WP_012648767.1 RNA polymerase-binding protein DksA -
  GEOB_RS18465 (Geob_3703) radA 4121942..4123288 (-) 1347 WP_012648768.1 DNA repair protein RadA Machinery gene
  GEOB_RS18470 (Geob_3704) - 4123447..4125075 (+) 1629 WP_012648769.1 HEAT repeat domain-containing protein -
  GEOB_RS18475 (Geob_3705) - 4125068..4126444 (+) 1377 WP_012648770.1 HD-GYP domain-containing protein -
  GEOB_RS18480 (Geob_3706) - 4126472..4127053 (-) 582 WP_012648771.1 HEAT repeat domain-containing protein -
  GEOB_RS18485 (Geob_3707) - 4127112..4127426 (+) 315 WP_012648772.1 hypothetical protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 46954.57 Da        Isoelectric Point: 8.2531

>NTDB_id=32809 GEOB_RS18465 WP_012648768.1 4121942..4123288(-) (radA) [Geotalea daltonii FRC-32]
MKTKTLYSCQKCGYQSAKWLGRCPDCGAWNTMEEEVAIKSGAAASRALPGGPPLPINQVGGEAEMHLPTGISEFDRVLGG
GLVAGSLVLIGGDPGIGKSTLLLQAMNHVAKTGTVLYVSGEESARQIKLRGARMGVNAPGLYVLAETALENILAHIARMQ
PKAIVIDSIQTIFTSGLESAPGSVSQVRETAGRLMIMAKGSGIPVFIVGHVTKDGAIAGPRVLEHLVDTVLYFEGDSGHP
FRILRAVKNRFGSTNEIGVFEMKEGGLCEVRNPSELFLSERPMGASGSVVVASLEGSRPVLVELQALVSASSLGVPRRTT
IGVDHHRLSLLVAVLEKKVGLSLAGQDIFLNVAGGVKLNEPAADLGMVVAVASSHLDKPIAGNTLLLGEVGLTGEVRGIT
QPELRVKEAAKLGFSRCILPAGNLKQVKAKGLELIGVKSVDEALDKVF

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=32809 GEOB_RS18465 WP_012648768.1 4121942..4123288(-) (radA) [Geotalea daltonii FRC-32]
TTGAAAACAAAGACCCTTTACAGTTGCCAGAAATGCGGCTACCAGTCCGCCAAGTGGCTTGGCCGATGCCCCGACTGCGG
GGCATGGAATACCATGGAGGAAGAAGTTGCCATTAAATCCGGGGCAGCCGCTAGCAGGGCACTCCCCGGAGGCCCCCCAT
TGCCGATCAACCAGGTCGGTGGGGAAGCAGAGATGCATCTTCCCACTGGCATCTCAGAGTTCGACCGGGTGCTGGGAGGG
GGGCTGGTGGCAGGTTCCCTGGTCCTTATCGGTGGTGATCCCGGTATCGGTAAATCTACCTTGCTTCTGCAGGCCATGAA
CCACGTGGCTAAGACCGGCACCGTCCTTTATGTTTCCGGAGAAGAGTCCGCCCGGCAGATCAAGTTGCGTGGCGCGAGAA
TGGGAGTCAATGCCCCTGGCCTCTACGTCCTGGCCGAGACGGCCCTGGAAAACATCCTTGCCCATATTGCCAGGATGCAG
CCGAAGGCGATAGTTATCGATTCCATTCAAACTATCTTCACCTCAGGGCTGGAATCGGCACCCGGCAGCGTCAGTCAGGT
TCGCGAGACAGCCGGCCGGCTGATGATAATGGCGAAAGGGAGCGGGATTCCGGTCTTCATTGTCGGCCATGTGACCAAAG
ATGGCGCCATAGCCGGCCCACGAGTGCTGGAACATCTTGTTGACACCGTTCTCTACTTTGAAGGGGACAGCGGTCATCCG
TTCAGGATTCTGCGTGCGGTTAAAAACCGGTTCGGTTCCACCAACGAGATCGGTGTCTTCGAAATGAAGGAAGGAGGGCT
CTGCGAGGTCAGAAATCCCTCCGAGCTTTTCCTTTCCGAACGGCCCATGGGGGCTTCCGGCTCCGTGGTCGTGGCGTCTC
TGGAAGGGAGTCGCCCAGTCCTCGTCGAGCTGCAGGCCCTGGTGAGTGCCTCTTCACTTGGTGTTCCTCGCCGCACAACT
ATTGGCGTCGATCATCACCGTCTGTCCCTGCTTGTGGCTGTTCTTGAGAAAAAAGTGGGGCTGTCGCTGGCGGGCCAGGA
CATATTTCTGAACGTGGCGGGCGGGGTAAAACTGAATGAGCCTGCCGCCGACCTGGGCATGGTTGTTGCCGTCGCTTCAA
GCCACCTTGACAAGCCCATAGCCGGCAACACCCTTCTTTTGGGGGAGGTGGGTCTGACCGGAGAAGTGCGAGGTATTACC
CAGCCCGAGCTTCGAGTCAAGGAGGCCGCCAAGCTGGGATTCAGCCGCTGCATCCTTCCAGCCGGCAATCTGAAACAGGT
CAAAGCAAAGGGTCTTGAACTCATTGGCGTGAAATCGGTCGACGAAGCCCTGGACAAGGTCTTTTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(76-215)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(7-34)

Subunit ChlI of Mg-chelatase (ChlI)

(337-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

59.645

100

0.6
  radA Streptococcus pneumoniae Rx1

54

100

0.542
  radA Streptococcus pneumoniae D39

54

100

0.542
  radA Streptococcus pneumoniae R6

54

100

0.542
  radA Streptococcus pneumoniae TIGR4

54

100

0.542
  radA Streptococcus mitis NCTC 12261

53.778

100

0.54
  radA Streptococcus mitis SK321

53.778

100

0.54

Multiple sequence alignment