Detailed information NTG0328085

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: FGF55_RS14065
• Genome accession: NZ_CP041691
• Coordinates: 2860262..2861395 (-)
• Length: 377 a.a.
• NCBI ID: WP_014418617.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain ZJU1
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2855262..2866395

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FGF55_RS14050 (FGF55_14050)	mdh	2855868..2856806 (-)	939	WP_003152455.1	malate dehydrogenase	-
FGF55_RS14055 (FGF55_14055)	icd	2856852..2858123 (-)	1272	WP_014418616.1	NADP-dependent isocitrate dehydrogenase	-
FGF55_RS14060 (FGF55_14060)	citZ	2858284..2859402 (-)	1119	WP_003152453.1	citrate synthase	-
FGF55_RS20380	-	2860120..2860272 (-)	153	WP_017418344.1	hypothetical protein	-
FGF55_RS14065 (FGF55_14065)	rapC	2860262..2861395 (-)	1134	WP_014418617.1	Rap family tetratricopeptide repeat protein	Regulator
FGF55_RS14070 (FGF55_14070)	-	2861688..2862125 (-)	438	WP_014418618.1	hypothetical protein	-
FGF55_RS14075 (FGF55_14075)	-	2862282..2862410 (-)	129	Protein_2718	peptidoglycan-binding domain-containing protein	-
FGF55_RS14080 (FGF55_14080)	-	2862600..2863010 (-)	411	WP_014418619.1	YjdF family protein	-
FGF55_RS14090 (FGF55_14090)	-	2863414..2863878 (-)	465	WP_003152447.1	DUF441 domain-containing protein	-
FGF55_RS14095 (FGF55_14095)	ytvI	2863976..2865091 (+)	1116	WP_022552837.1	sporulation integral membrane protein YtvI	-
FGF55_RS14100 (FGF55_14100)	-	2865123..2865506 (-)	384	WP_012118168.1	FxsA family protein	-

Sequence

Protein

• Length: 377 a.a.
• Molecular weight: 44826.60 Da
• Isoelectric Point: 5.9708

>NTDB_id=328085 FGF55_RS14065 WP_014418617.1 2860262..2861395(-) (rapC) [Bacillus amyloliquefaciens strain ZJU1]
MDQVLPSSHVGVKINEWYKMIRQFSVPDAEILKAEVEHEIKEMEEDEYLLIYYSLMTFRHQLMLDYLNPEIKYRTDRPTT
TELLEKIEKPQKTLTGLLKYYSHFFRGMYEFDQKQYVEAINFYRKAEMEIHHVSDEIEQAEFHFKLAEAYYNMKQTHVSM
HHILKALEIYDRNPLYTVRKIQSLFVIVGNYLDFKHYEKGLQHLEEALKLSQEFGHKRLISSALYNLGESYHYMGQEEKA
EAYLRQAIVIGEEMKLRTLPHSYYSLSIVLFKQKKTAAAGQALKEGLKTAVKYDDNLFCLLTEFLYVLFAEPINKDSLVE
ILSKLENIHMYSYVEELTLLTANFFKGMKDFEMATIFYDKMVESQLQIQRGDCLYEY

Nucleotide

• Length: 1134 bp

>NTDB_id=328085 FGF55_RS14065 WP_014418617.1 2860262..2861395(-) (rapC) [Bacillus amyloliquefaciens strain ZJU1]
ATGGACCAGGTATTACCGTCTTCACATGTAGGCGTTAAAATTAACGAGTGGTACAAGATGATTCGTCAATTTAGTGTGCC
AGACGCGGAAATTTTAAAAGCCGAAGTGGAACACGAAATAAAAGAAATGGAAGAAGACGAATATTTACTTATTTATTACT
CTCTCATGACTTTTCGTCATCAACTTATGCTAGATTATTTAAACCCAGAAATAAAGTATAGGACTGATAGGCCAACCACC
ACAGAACTACTTGAGAAGATTGAGAAACCACAAAAAACACTTACCGGCCTCTTAAAATATTACTCACATTTTTTTCGCGG
AATGTACGAATTTGATCAGAAGCAGTATGTAGAAGCAATTAATTTTTATCGTAAAGCAGAGATGGAAATTCATCATGTCT
CTGATGAAATAGAACAAGCTGAGTTTCATTTTAAGTTGGCAGAGGCTTATTATAATATGAAACAAACGCACGTATCCATG
CATCATATTCTAAAAGCGTTAGAAATTTATGATCGAAACCCGCTTTATACCGTCCGAAAAATTCAAAGTTTATTTGTAAT
TGTGGGTAATTATCTTGATTTTAAACATTACGAAAAAGGATTACAGCATCTTGAGGAAGCCTTGAAGCTTTCGCAAGAAT
TTGGTCATAAAAGGTTGATTTCCTCTGCTCTTTATAATTTGGGTGAAAGTTATCACTACATGGGACAAGAAGAAAAGGCC
GAAGCGTATTTGAGACAAGCAATTGTGATTGGTGAAGAAATGAAATTGAGAACTCTGCCCCATTCATATTATTCACTTTC
CATAGTATTATTTAAGCAAAAGAAAACAGCCGCGGCAGGCCAAGCTTTAAAAGAAGGTTTAAAAACAGCAGTAAAATATG
ACGACAATTTGTTTTGCTTATTAACAGAGTTTTTATATGTTTTATTTGCTGAACCGATTAACAAAGACAGCCTTGTAGAA
ATTTTAAGTAAGCTTGAAAATATTCATATGTATTCGTATGTCGAAGAGTTGACACTTTTAACAGCAAACTTTTTCAAAGG
AATGAAGGACTTTGAAATGGCTACAATTTTTTATGATAAGATGGTGGAGTCTCAACTTCAAATACAGCGGGGGGATTGTT
TGTATGAATATTAA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (197-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	42.133	99.469	0.419
rapF	Bacillus subtilis subsp. subtilis str. 168	38.889	100	0.39