Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   SP670_RS03240 Genome accession   NC_014498
Coordinates   602057..602323 (+) Length   88 a.a.
NCBI ID   WP_001811621.1    Uniprot ID   -
Organism   Streptococcus pneumoniae 670-6B     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 597057..607323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP670_RS03220 (SP670_0644) - 597271..597780 (+) 510 WP_000584667.1 N-acetyltransferase -
  SP670_RS03225 (SP670_0645) pheT 597857..600259 (+) 2403 WP_000909146.1 phenylalanine--tRNA ligase subunit beta -
  SP670_RS03230 (SP670_0646) - 600327..601328 (-) 1002 WP_000597970.1 endonuclease/exonuclease/phosphatase family protein -
  SP670_RS03235 (SP670_0647) - 601484..601972 (+) 489 Protein_624 transposase -
  SP670_RS03240 (SP670_0648) HI0659 602057..602323 (+) 267 WP_001811621.1 helix-turn-helix domain-containing protein Machinery gene
  SP670_RS03245 (SP670_0649) metE 602584..604833 (+) 2250 WP_000108268.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  SP670_RS03250 (SP670_0650) metF 604897..605763 (+) 867 WP_000089979.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  SP670_RS14715 - 605945..606214 (-) 270 WP_001811622.1 hypothetical protein -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9560.13 Da        Isoelectric Point: 4.8274

>NTDB_id=32805 SP670_RS03240 WP_001811621.1 602057..602323(+) (HI0659) [Streptococcus pneumoniae 670-6B]
MEGCLSELFSKEEILESDMRVAIMSELIEARNKQGISQKKLEEVSGVSQPVIARMETGKTSPQLDTVLKVLASLGKTLAV
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=32805 SP670_RS03240 WP_001811621.1 602057..602323(+) (HI0659) [Streptococcus pneumoniae 670-6B]
TTGGAAGGATGTCTATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTAGCTATCATGAGCGAGTT
GATTGAAGCCAGAAATAAGCAAGGAATCAGTCAGAAAAAGCTAGAGGAAGTCAGTGGAGTGAGTCAGCCTGTTATAGCTA
GGATGGAGACAGGTAAGACTAGTCCACAGTTGGACACAGTCTTAAAAGTCCTAGCTAGTCTAGGAAAGACACTAGCAGTC
GTTCCACTTGAACAGGGAAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

61.039

87.5

0.534

Multiple sequence alignment