Detailed information
Bioinformatically predicted
Overview
| Name | recD | Type | Machinery gene |
| Locus tag | EGH15_RS04490 | Genome accession | NZ_CP034016 |
| Coordinates | 767936..769681 (+) | Length | 581 a.a. |
| NCBI ID | WP_003688652.1 | Uniprot ID | A0AA44U7G6 |
| Organism | Neisseria gonorrhoeae strain FQ84 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 732752..807825 | 767936..769681 | within | 0 |
| IS/Tn | 770368..771369 | 767936..769681 | flank | 687 |
Gene organization within MGE regions
Location: 732752..807825
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGH15_RS04270 (EGH15_04270) | - | 732752..733822 (-) | 1071 | WP_003693067.1 | integrase arm-type DNA-binding domain-containing protein | - |
| EGH15_RS04275 (EGH15_04275) | - | 734031..734810 (-) | 780 | WP_003688701.1 | ferredoxin--NADP reductase | - |
| EGH15_RS04295 (EGH15_04295) | dinB | 735710..736768 (+) | 1059 | WP_003695315.1 | DNA polymerase IV | - |
| EGH15_RS04300 (EGH15_04300) | rep | 736838..738853 (-) | 2016 | WP_003706226.1 | DNA helicase Rep | - |
| EGH15_RS04305 (EGH15_04305) | aroD | 738873..739637 (-) | 765 | WP_003688696.1 | type I 3-dehydroquinate dehydratase | - |
| EGH15_RS04310 (EGH15_04310) | recA | 739837..740883 (+) | 1047 | WP_003688695.1 | recombinase RecA | Machinery gene |
| EGH15_RS04325 (EGH15_04325) | - | 741536..741871 (-) | 336 | WP_003688693.1 | YbaB/EbfC family nucleoid-associated protein | - |
| EGH15_RS04330 (EGH15_04330) | dnaX | 741952..744075 (-) | 2124 | WP_003695312.1 | DNA polymerase III subunit gamma/tau | - |
| EGH15_RS04335 (EGH15_04335) | mutL | 744170..746146 (-) | 1977 | WP_003688688.1 | DNA mismatch repair endonuclease MutL | - |
| EGH15_RS04340 (EGH15_04340) | - | 746290..746475 (+) | 186 | WP_003688687.1 | DUF3460 family protein | - |
| EGH15_RS04345 (EGH15_04345) | - | 746486..747154 (+) | 669 | WP_003688686.1 | O-methyltransferase | - |
| EGH15_RS04350 (EGH15_04350) | - | 747154..747867 (+) | 714 | WP_050154366.1 | tol-pal system YbgF family protein | - |
| EGH15_RS04355 (EGH15_04355) | purE | 747915..748400 (+) | 486 | WP_003688684.1 | 5-(carboxyamino)imidazole ribonucleotide mutase | - |
| EGH15_RS14145 (EGH15_04365) | - | 748612..749423 (-) | 812 | Protein_752 | transposase | - |
| EGH15_RS04375 (EGH15_04375) | - | 749794..750159 (+) | 366 | Protein_753 | transposase | - |
| EGH15_RS04380 (EGH15_04380) | - | 750322..751230 (+) | 909 | WP_003688683.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| EGH15_RS04385 (EGH15_04385) | - | 751386..752042 (-) | 657 | WP_003688682.1 | response regulator transcription factor | - |
| EGH15_RS04390 (EGH15_04390) | - | 752039..753808 (-) | 1770 | WP_003688681.1 | histidine kinase | - |
| EGH15_RS04395 (EGH15_04395) | - | 754015..754629 (+) | 615 | WP_003691204.1 | molybdenum cofactor guanylyltransferase | - |
| EGH15_RS04400 (EGH15_04400) | - | 754792..755409 (+) | 618 | WP_010358100.1 | riboflavin synthase | - |
| EGH15_RS04405 (EGH15_04405) | - | 755417..756280 (+) | 864 | WP_003693081.1 | ATP-binding protein | - |
| EGH15_RS04410 (EGH15_04410) | - | 756293..756727 (-) | 435 | WP_003688677.1 | Spy/CpxP family protein refolding chaperone | - |
| EGH15_RS04415 (EGH15_04415) | rpe | 756873..757556 (+) | 684 | WP_003688675.1 | ribulose-phosphate 3-epimerase | - |
| EGH15_RS04425 (EGH15_04425) | ruvB | 757801..758832 (-) | 1032 | WP_003691202.1 | Holliday junction branch migration DNA helicase RuvB | - |
| EGH15_RS04430 (EGH15_04430) | - | 758914..759222 (-) | 309 | WP_003688671.1 | hypothetical protein | - |
| EGH15_RS04440 (EGH15_04440) | - | 759640..760872 (-) | 1233 | WP_003695301.1 | multifunctional CCA addition/repair protein | - |
| EGH15_RS04445 (EGH15_04445) | - | 760951..762579 (-) | 1629 | WP_010951119.1 | ABC-F family ATPase | - |
| EGH15_RS04450 (EGH15_04450) | - | 762729..763103 (+) | 375 | WP_003688664.1 | arsenate reductase | - |
| EGH15_RS04455 (EGH15_04455) | - | 763152..764690 (+) | 1539 | WP_003695299.1 | SurA N-terminal domain-containing protein | - |
| EGH15_RS04460 (EGH15_04460) | recR | 764757..765374 (+) | 618 | WP_003688660.1 | recombination mediator RecR | - |
| EGH15_RS04465 (EGH15_04465) | - | 765430..765708 (-) | 279 | WP_003688659.1 | hypothetical protein | - |
| EGH15_RS04480 (EGH15_04480) | - | 765934..767181 (+) | 1248 | WP_003691197.1 | lipoprotein-releasing ABC transporter permease subunit | - |
| EGH15_RS04485 (EGH15_04485) | lolD | 767174..767869 (+) | 696 | WP_003688655.1 | lipoprotein-releasing ABC transporter ATP-binding protein LolD | - |
| EGH15_RS04490 (EGH15_04490) | recD | 767936..769681 (+) | 1746 | WP_003688652.1 | exodeoxyribonuclease V subunit alpha | Machinery gene |
| EGH15_RS04495 (EGH15_04495) | - | 769753..770399 (-) | 647 | Protein_773 | class I SAM-dependent methyltransferase | - |
| EGH15_RS04500 (EGH15_04500) | - | 770407..771369 (+) | 963 | WP_050173530.1 | IS110 family transposase | - |
| EGH15_RS13355 | - | 771502..771957 (-) | 456 | Protein_775 | methyltransferase | - |
| EGH15_RS04510 (EGH15_04510) | lon | 772209..774671 (+) | 2463 | WP_003691187.1 | endopeptidase La | - |
| EGH15_RS04515 (EGH15_04515) | - | 774853..775122 (+) | 270 | WP_003688640.1 | HU family DNA-binding protein | - |
| EGH15_RS04520 (EGH15_04520) | - | 775298..775732 (-) | 435 | WP_003688638.1 | hypothetical protein | - |
| EGH15_RS04525 (EGH15_04525) | - | 775725..777032 (-) | 1308 | WP_003695291.1 | homoserine dehydrogenase | - |
| EGH15_RS04530 (EGH15_04530) | - | 777228..777599 (+) | 372 | WP_003688636.1 | Mth938-like domain-containing protein | - |
| EGH15_RS04535 (EGH15_04535) | - | 777676..779598 (+) | 1923 | WP_003691184.1 | ATP-binding cassette domain-containing protein | - |
| EGH15_RS04540 (EGH15_04540) | - | 779585..779980 (+) | 396 | WP_010358122.1 | hypothetical protein | - |
| EGH15_RS04545 (EGH15_04545) | - | 780071..780583 (+) | 513 | WP_003688633.1 | hypothetical protein | - |
| EGH15_RS04555 (EGH15_04555) | - | 781028..781723 (-) | 696 | WP_041421278.1 | DUF4400 domain-containing protein | - |
| EGH15_RS04560 (EGH15_04560) | traD | 781713..783755 (-) | 2043 | WP_012503640.1 | type IV conjugative transfer system coupling protein TraD | - |
| EGH15_RS04565 (EGH15_04565) | mobH | 783752..786304 (-) | 2553 | WP_012503639.1 | MobH family relaxase | - |
| EGH15_RS04570 (EGH15_04570) | - | 786301..786720 (-) | 420 | WP_003693104.1 | hypothetical protein | - |
| EGH15_RS04575 (EGH15_04575) | - | 787231..787692 (+) | 462 | WP_012503638.1 | lytic transglycosylase domain-containing protein | - |
| EGH15_RS04580 (EGH15_04580) | - | 787662..788183 (+) | 522 | WP_003695285.1 | OmpA family protein | - |
| EGH15_RS04585 (EGH15_04585) | traA | 788239..788535 (+) | 297 | WP_003697092.1 | TraA family conjugative transfer protein | - |
| EGH15_RS04590 (EGH15_04590) | traL | 788557..788838 (+) | 282 | WP_003693110.1 | type IV conjugative transfer system protein TraL | - |
| EGH15_RS04595 (EGH15_04595) | - | 788835..789500 (+) | 666 | WP_003704028.1 | conjugal transfer protein TraE | - |
| EGH15_RS04600 (EGH15_04600) | - | 789502..790236 (+) | 735 | WP_003693114.1 | type-F conjugative transfer system secretin TraK | - |
| EGH15_RS04605 (EGH15_04605) | - | 790238..791551 (+) | 1314 | WP_003697090.1 | TrbI/VirB10 family protein | - |
| EGH15_RS04610 (EGH15_04610) | - | 791561..792280 (+) | 720 | WP_003693119.1 | DsbC family protein | - |
| EGH15_RS04615 (EGH15_04615) | - | 792277..792858 (+) | 582 | WP_017146802.1 | TraV family lipoprotein | - |
| EGH15_RS04620 (EGH15_04620) | traC | 792868..795444 (+) | 2577 | WP_003693122.1 | type IV secretion system protein TraC | - |
| EGH15_RS04625 (EGH15_04625) | - | 795472..796020 (+) | 549 | WP_003695274.1 | hypothetical protein | - |
| EGH15_RS04630 (EGH15_04630) | - | 796020..796565 (+) | 546 | WP_003704029.1 | S26 family signal peptidase | - |
| EGH15_RS04635 (EGH15_04635) | - | 796574..797230 (+) | 657 | WP_003693128.1 | hypothetical protein | - |
| EGH15_RS04640 (EGH15_04640) | - | 797227..798345 (+) | 1119 | WP_003695266.1 | TraU family protein | - |
| EGH15_RS04645 (EGH15_04645) | trbC | 798360..799112 (+) | 753 | WP_003699946.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| EGH15_RS04650 (EGH15_04650) | - | 799109..800353 (+) | 1245 | WP_003695263.1 | hypothetical protein | - |
| EGH15_RS04655 (EGH15_04655) | traN | 800377..801933 (+) | 1557 | WP_229684969.1 | conjugal transfer protein TraN | - |
| EGH15_RS04660 (EGH15_04660) | - | 801920..802345 (+) | 426 | WP_003693140.1 | hypothetical protein | - |
| EGH15_RS04665 (EGH15_04665) | - | 802357..803133 (+) | 777 | WP_012503632.1 | thioredoxin family protein | - |
| EGH15_RS04670 (EGH15_04670) | - | 803305..804816 (+) | 1512 | WP_041421275.1 | conjugal transfer protein TraH | - |
| EGH15_RS04675 (EGH15_04675) | - | 804823..807825 (+) | 3003 | WP_012503630.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
Sequence
Protein
Download Length: 581 a.a. Molecular weight: 63039.83 Da Isoelectric Point: 6.0083
>NTDB_id=328048 EGH15_RS04490 WP_003688652.1 767936..769681(+) (recD) [Neisseria gonorrhoeae strain FQ84]
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALGSMLERVFSQE
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALGSMLERVFSQE
Nucleotide
Download Length: 1746 bp
>NTDB_id=328048 EGH15_RS04490 WP_003688652.1 767936..769681(+) (recD) [Neisseria gonorrhoeae strain FQ84]
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCGGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAATGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGGCAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCGGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAATGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGGCAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recD | Neisseria gonorrhoeae strain FA1090 |
99.828 |
100 |
0.998 |