Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   FGF55_RS09480 Genome accession   NZ_CP041691
Coordinates   1902440..1903060 (-) Length   206 a.a.
NCBI ID   WP_007611720.1    Uniprot ID   A0AAI8HP04
Organism   Bacillus amyloliquefaciens strain ZJU1     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1897440..1908060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGF55_RS09455 (FGF55_09455) - 1898404..1898838 (+) 435 WP_003154017.1 dUTP diphosphatase -
  FGF55_RS09460 (FGF55_09460) - 1899146..1899970 (+) 825 WP_014418012.1 poly-gamma-glutamate hydrolase family protein -
  FGF55_RS20320 - 1900076..1900225 (+) 150 WP_014418013.1 hypothetical protein -
  FGF55_RS09465 (FGF55_09465) - 1900212..1901042 (+) 831 WP_014418014.1 prohibitin family protein -
  FGF55_RS09470 (FGF55_09470) - 1901070..1901519 (-) 450 WP_014418015.1 YndM family protein -
  FGF55_RS09475 (FGF55_09475) - 1901673..1902101 (+) 429 WP_014418016.1 hypothetical protein -
  FGF55_RS09480 (FGF55_09480) dinR/lexA 1902440..1903060 (-) 621 WP_007611720.1 transcriptional repressor LexA Regulator
  FGF55_RS09485 (FGF55_09485) yneA 1903217..1903528 (+) 312 WP_003154001.1 cell division suppressor protein YneA -
  FGF55_RS09490 (FGF55_09490) - 1903544..1904194 (+) 651 WP_021493418.1 recombinase family protein -
  FGF55_RS09495 (FGF55_09495) - 1904263..1904496 (+) 234 WP_003153997.1 DUF896 domain-containing protein -
  FGF55_RS09500 (FGF55_09500) recP/tkt 1904663..1906666 (+) 2004 WP_014418018.1 transketolase Machinery gene
  FGF55_RS09505 (FGF55_09505) sirA 1906818..1907264 (+) 447 WP_014418019.1 sporulation inhibitor of replication protein SirA -
  FGF55_RS09510 (FGF55_09510) - 1907350..1907568 (+) 219 WP_003153994.1 YneF family protein -
  FGF55_RS09515 (FGF55_09515) - 1907642..1907815 (-) 174 WP_012117647.1 aspartyl-phosphate phosphatase Spo0E family protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23046.64 Da        Isoelectric Point: 5.1645

>NTDB_id=328048 FGF55_RS09480 WP_007611720.1 1902440..1903060(-) (dinR/lexA) [Bacillus amyloliquefaciens strain ZJU1]
MTKLSKRQLDILRFIKEEVKTKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDPTKPRAIEVLDEEEVQIPKSQ
VVNVPVIGKVTAGIPITAVENIDEYFPLPDRMVPPGEHVFMLEIMGESMIDAGIFDKDYVIVKQQNTANNGEIVVAMTED
DEATVKRFYKEDNYVRLQPENPTMEPIILQNVSILGKVIGVFRAVH

Nucleotide


Download         Length: 621 bp        

>NTDB_id=328048 FGF55_RS09480 WP_007611720.1 1902440..1903060(-) (dinR/lexA) [Bacillus amyloliquefaciens strain ZJU1]
ATGACGAAGCTATCAAAAAGGCAGCTTGATATCCTGCGTTTTATTAAAGAAGAGGTAAAAACGAAAGGATATCCGCCTTC
TGTAAGAGAGATAGGAGAAGCAGTAGGACTGGCTTCCAGTTCAACCGTGCACGGCCATTTGGCGCGGCTGGAGACAAAAG
GCCTGATCAGACGGGACCCTACTAAACCGAGAGCGATTGAGGTATTGGATGAAGAAGAAGTCCAAATTCCGAAAAGCCAG
GTCGTAAACGTTCCGGTCATCGGGAAAGTGACGGCGGGTATTCCGATTACGGCTGTTGAAAATATCGACGAGTATTTTCC
GCTTCCTGACCGGATGGTTCCTCCGGGCGAACATGTCTTTATGTTAGAAATCATGGGAGAAAGTATGATTGACGCCGGCA
TTTTTGACAAAGATTACGTCATCGTCAAACAGCAGAACACGGCCAATAACGGAGAAATCGTCGTAGCTATGACCGAAGAT
GATGAAGCGACGGTTAAGCGCTTCTATAAAGAAGACAATTATGTGCGGCTGCAGCCGGAAAATCCGACGATGGAGCCGAT
TATCCTGCAAAACGTAAGCATTTTGGGGAAAGTTATCGGCGTATTCAGAGCCGTACATTAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(85-199)

LexA DNA binding domain (LexA_DNA_bind)

(1-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAI8HP04

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

92.718

100

0.927

Multiple sequence alignment