Detailed information NTG0327984

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: FGF55_RS01500
• Genome accession: NZ_CP041691
• Coordinates: 271419..272540 (+)
• Length: 373 a.a.
• NCBI ID: WP_014416837.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain ZJU1
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 266419..277540

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FGF55_RS01480 (FGF55_01480)	-	266732..267727 (-)	996	WP_014416833.1	DUF5105 domain-containing protein	-
FGF55_RS01485 (FGF55_01485)	-	267850..269250 (+)	1401	WP_032863975.1	YcdB/YcdC domain-containing protein	-
FGF55_RS01490 (FGF55_01490)	-	269451..270809 (+)	1359	WP_014416835.1	YcdB/YcdC domain-containing protein	-
FGF55_RS01495 (FGF55_01495)	-	270806..271309 (-)	504	WP_014416836.1	M15 family metallopeptidase	-
FGF55_RS01500 (FGF55_01500)	rapF	271419..272540 (+)	1122	WP_014416837.1	tetratricopeptide repeat protein	Regulator
FGF55_RS01505 (FGF55_01505)	-	272656..273435 (+)	780	WP_014416838.1	glucose 1-dehydrogenase	-
FGF55_RS01510 (FGF55_01510)	-	273517..275196 (+)	1680	WP_014416839.1	alpha-glucosidase	-
FGF55_RS01515 (FGF55_01515)	-	275382..276341 (+)	960	WP_143854231.1	metal ABC transporter substrate-binding protein	-
FGF55_RS01520 (FGF55_01520)	-	276396..277091 (+)	696	WP_003156655.1	metal ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44299.50 Da
• Isoelectric Point: 5.0806

>NTDB_id=327984 FGF55_RS01500 WP_014416837.1 271419..272540(+) (rapF) [Bacillus amyloliquefaciens strain ZJU1]
MKSKIPSEEVAVKMNEWYKLIRAFEADKAEALKREIQFELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHKKALEYLECALEHAERLDDQYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFRQVIQAVFSLTHIYFKTEKYSEAAASCARGMRSAAEWEDEIYLTKFRLIKELYQGEGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHQRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide

• Length: 1122 bp

>NTDB_id=327984 FGF55_RS01500 WP_014416837.1 271419..272540(+) (rapF) [Bacillus amyloliquefaciens strain ZJU1]
ATGAAATCCAAGATTCCATCTGAAGAAGTGGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TAAAGCTGAAGCGCTGAAACGGGAGATTCAATTTGAACTCGAAGATATGGAAGAGAACCAGGATTTATTGTTGTATTTTT
CATTGATGGAATTTCGGCACCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGGGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAGCGGGCTGAGGAAAAGCTTGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTTTGTATAAAATTTCTGAGGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TACGCGGGACAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGAAATCTGATGGACGCCCAGCAGCATAAAAAAGCGTTGGAATACCTCGAATGCGCCTTGGAGCACGCGGAGCGGCTTG
ATGATCAATATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTCTGGGTGACTTTTGCAAAGCGGCG
GAGGATTTTGAACGGGCGGCCGCCGGATTTGAAGCACACAGCTTCCGGCAGGTCATCCAGGCTGTTTTTTCACTCACGCA
TATCTACTTTAAAACGGAAAAATACAGTGAAGCCGCCGCCAGCTGCGCGCGGGGCATGAGAAGCGCGGCGGAATGGGAAG
ATGAGATCTATCTGACGAAATTCCGTCTGATTAAAGAGCTTTATCAGGGGGAAGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATTCTGGAATCAAAAGAGCTGTTGGCTGACACAGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATCAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAACTACGCAT
AA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (187-251)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.857	99.464	0.426
rapC	Bacillus subtilis subsp. subtilis str. 168	40.323	99.732	0.402