Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   VV7356_RS22905 Genome accession   NZ_CP041683
Coordinates   5057241..5058428 (-) Length   395 a.a.
NCBI ID   WP_026050298.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 7356     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5052241..5063428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV7356_RS22875 (VV7356_23475) - 5052412..5052822 (+) 411 WP_011079172.1 flagellar basal body-associated protein FliL -
  VV7356_RS22880 (VV7356_23480) glpG 5052871..5053713 (-) 843 WP_017789674.1 rhomboid family intramembrane serine protease GlpG -
  VV7356_RS22885 (VV7356_23485) glpE 5053799..5054119 (-) 321 WP_017789673.1 thiosulfate sulfurtransferase GlpE -
  VV7356_RS22890 (VV7356_23490) rpoH 5054554..5055411 (-) 858 WP_017420381.1 RNA polymerase sigma factor RpoH -
  VV7356_RS22895 (VV7356_23495) ftsX 5055588..5056556 (-) 969 WP_011079168.1 permease-like cell division protein FtsX -
  VV7356_RS22900 (VV7356_23500) ftsE 5056543..5057220 (-) 678 WP_011079167.1 cell division ATP-binding protein FtsE -
  VV7356_RS22905 (VV7356_23505) pilA 5057241..5058428 (-) 1188 WP_026050298.1 signal recognition particle-docking protein FtsY Machinery gene
  VV7356_RS22910 (VV7356_23510) rsmD 5058632..5059225 (+) 594 WP_011079165.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  VV7356_RS22915 (VV7356_23515) - 5059244..5059510 (+) 267 WP_017420383.1 DUF1145 domain-containing protein -
  VV7356_RS22920 (VV7356_23520) - 5059594..5060187 (-) 594 WP_026050297.1 YhgN family NAAT transporter -
  VV7356_RS22925 (VV7356_23525) - 5060332..5060553 (-) 222 WP_017420385.1 YecH family metal-binding protein -
  VV7356_RS22930 (VV7356_23530) - 5060630..5061250 (-) 621 WP_013570939.1 lysoplasmalogenase -
  VV7356_RS22935 (VV7356_23540) - 5062282..5062650 (-) 369 WP_026130571.1 hypothetical protein -
  VV7356_RS22940 (VV7356_23545) - 5062886..5063215 (+) 330 WP_017789671.1 DUF2500 domain-containing protein -

Sequence

Protein


Download         Length: 395 a.a.        Molecular weight: 43292.20 Da        Isoelectric Point: 4.3973

>NTDB_id=327968 VV7356_RS22905 WP_026050298.1 5057241..5058428(-) (pilA) [Vibrio vulnificus strain 7356]
MTEKKKRGLLSWLGFGDDDQVKQPEPAQSEEVISESDEKTVESVEPIVSQEVVEEVAVEPISESEAEEPVEVTPVVVEAP
RVQEQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDELFEELEEQLLVADVGMDTTLKIIENLTEKASRRDLKD
GEALYGLLKEEMAEILTKVEQPLQVDSSKTPYVILMVGVNGVGKTTTIGKLAKQFQNQGKKVMLAAGDTFRAAAVEQLQV
WGERNNVPVIAQHTGADSASVIYDAIEAAKARGVDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAG
TGQNAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFNIPIRYIGVGEGIEDLRPFETQEFIDALFSREE

Nucleotide


Download         Length: 1188 bp        

>NTDB_id=327968 VV7356_RS22905 WP_026050298.1 5057241..5058428(-) (pilA) [Vibrio vulnificus strain 7356]
ATGACGGAAAAGAAAAAGCGCGGATTACTATCGTGGCTTGGCTTTGGTGACGATGACCAAGTAAAACAACCAGAGCCTGC
ACAATCAGAAGAGGTGATCAGCGAGTCTGACGAAAAAACCGTAGAGAGCGTTGAACCGATTGTCAGCCAAGAAGTGGTGG
AAGAGGTTGCGGTAGAGCCAATCAGCGAATCAGAAGCTGAAGAGCCCGTTGAAGTGACACCTGTGGTGGTTGAAGCGCCG
CGTGTGCAAGAACAAGAAAAACCAACAGAAAGCTTTTTTGCGCGCCTAAAACGCAGCTTGAGTCGTACGAAAGCCAATAT
CGGCGCTGGTTTCTTTGGCCTATTTAAAGGCAAGAAAATCGATGATGAGCTGTTTGAAGAGCTGGAAGAACAGCTACTCG
TTGCGGATGTGGGTATGGATACCACGTTGAAAATCATCGAAAACTTAACAGAAAAAGCGTCTCGCCGTGACTTAAAAGAT
GGTGAGGCTCTGTATGGTTTGCTCAAAGAAGAGATGGCGGAGATCCTCACTAAGGTTGAACAACCATTGCAAGTGGACAG
CAGCAAAACCCCTTACGTTATCCTGATGGTTGGGGTAAATGGCGTGGGTAAGACCACCACCATTGGTAAGTTGGCGAAAC
AGTTCCAAAATCAAGGTAAGAAAGTGATGTTGGCGGCGGGCGATACTTTCCGTGCGGCGGCTGTTGAGCAGTTGCAAGTG
TGGGGCGAGCGTAACAATGTCCCAGTGATCGCACAGCATACTGGCGCAGACAGTGCATCGGTGATTTATGATGCGATTGA
AGCCGCCAAAGCGCGTGGCGTTGATGTGGTGATCGCCGATACTGCGGGTCGCTTGCAAAACAAGAGCAACTTGATGGAAG
AGCTGCGCAAAATTGTTCGAGTGATGAAGAAAATCGACGACTCCGCGCCGCATGAAATCATGTTGACCTTGGATGCAGGC
ACTGGTCAAAACGCCATTAGCCAAGCGAAACTGTTTAGCGATGTCGCGCCGATCACCGGGATCACCTTGACCAAACTGGA
TGGCACAGCGAAAGGCGGCGTGATCTTTGCTATTGCCGATCAGTTTAACATTCCTATTCGTTACATCGGTGTGGGGGAAG
GGATTGAGGATCTCCGCCCGTTTGAAACCCAAGAATTTATCGACGCGCTATTTAGTCGAGAAGAGTAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(192-391)

SRP54-type protein, helical bundle domain (SRP54_N)

(111-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

50.549

92.152

0.466