Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   VV7356_RS20295 Genome accession   NZ_CP041683
Coordinates   4532845..4533363 (-) Length   172 a.a.
NCBI ID   WP_017789870.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 7356     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4527845..4538363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV7356_RS20270 (VV7356_20850) rimM 4527914..4528462 (-) 549 WP_011079542.1 ribosome maturation factor RimM -
  VV7356_RS20275 (VV7356_20855) rpsP 4528478..4528726 (-) 249 WP_011079541.1 30S ribosomal protein S16 -
  VV7356_RS20280 (VV7356_20860) ffh 4529008..4530384 (-) 1377 WP_026130629.1 signal recognition particle protein -
  VV7356_RS20285 (VV7356_20865) - 4530598..4531392 (+) 795 WP_011079539.1 inner membrane protein YpjD -
  VV7356_RS20290 (VV7356_20870) - 4531479..4532756 (+) 1278 WP_011079538.1 HlyC/CorC family transporter -
  VV7356_RS20295 (VV7356_20875) luxS 4532845..4533363 (-) 519 WP_017789870.1 S-ribosylhomocysteine lyase Regulator
  VV7356_RS20300 (VV7356_20880) - 4533414..4534019 (-) 606 WP_233263908.1 hypothetical protein -
  VV7356_RS20305 (VV7356_20885) gshA 4534057..4535622 (-) 1566 WP_026130628.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18968.79 Da        Isoelectric Point: 5.2451

>NTDB_id=327946 VV7356_RS20295 WP_017789870.1 4532845..4533363(-) (luxS) [Vibrio vulnificus strain 7356]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRKHLNGASVEIIDISP
MGCRTGFYMSLIGEPTEQQVAAAWTASMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAQNILAAGISVNKNDELA
LPEAMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=327946 VV7356_RS20295 WP_017789870.1 4532845..4533363(-) (luxS) [Vibrio vulnificus strain 7356]
ATGCCATTATTAGATAGTTTTACCGTTGACCACACTCGCATGCATGCACCCGCGGTGCGTGTGGCAAAAACCATGCAGAC
GCCAAAAGGTGACACCATTACCGTGTTTGACTTACGTTTCACTGCACCTAACAAAGATATTTTGTCAGAGAAAGGCATTC
ACACGTTAGAGCACCTGTACGCAGGCTTTATGCGTAAGCATCTCAATGGCGCCTCGGTTGAGATCATCGATATCTCACCG
ATGGGCTGTCGTACCGGTTTCTACATGAGTTTGATTGGCGAGCCGACCGAACAACAAGTGGCGGCGGCGTGGACGGCTTC
GATGGAAGATGTGTTGAAAGTGGAAAGCCAAAACAAGATCCCTGAGTTGAACGAGTATCAGTGTGGCACCGCGGCCATGC
ACTCGCTAGATGAAGCGAAGCAAATCGCGCAGAACATTCTGGCAGCAGGAATTTCGGTGAATAAAAACGATGAACTGGCA
TTGCCAGAAGCGATGTTGAAAGAGCTCAAAGTGGATTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.719

99.419

0.872