Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   EFD68_RS07765 Genome accession   NZ_CP034011
Coordinates   1613244..1613690 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain P1D5C1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1608244..1618690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFD68_RS07735 (EFD68_08085) gcvPA 1609170..1610516 (-) 1347 WP_156668023.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  EFD68_RS07740 (EFD68_08090) gcvT 1610536..1611627 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  EFD68_RS07745 (EFD68_08095) - 1611786..1612310 (-) 525 WP_001015120.1 shikimate kinase -
  EFD68_RS07750 (EFD68_08100) - 1612300..1612446 (-) 147 WP_001792109.1 hypothetical protein -
  EFD68_RS07755 (EFD68_08105) comGF 1612543..1613040 (-) 498 WP_001788897.1 competence type IV pilus minor pilin ComGF Machinery gene
  EFD68_RS07760 (EFD68_08110) comGE 1612958..1613257 (-) 300 WP_000844410.1 hypothetical protein Machinery gene
  EFD68_RS07765 (EFD68_08115) comGD 1613244..1613690 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  EFD68_RS07770 (EFD68_08120) comGC 1613668..1613979 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  EFD68_RS07775 (EFD68_08125) comGB 1613993..1615063 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  EFD68_RS07780 (EFD68_08130) comGA 1615035..1616009 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  EFD68_RS07785 (EFD68_08135) - 1616061..1616684 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  EFD68_RS07790 (EFD68_08140) - 1616681..1617010 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  EFD68_RS07795 (EFD68_08145) - 1617010..1617996 (-) 987 WP_000161311.1 ROK family glucokinase -
  EFD68_RS07800 (EFD68_08150) - 1617993..1618196 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=327936 EFD68_RS07765 WP_001788899.1 1613244..1613690(-) (comGD) [Staphylococcus aureus strain P1D5C1]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=327936 EFD68_RS07765 WP_001788899.1 1613244..1613690(-) (comGD) [Staphylococcus aureus strain P1D5C1]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1

Multiple sequence alignment