Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   EFD69_RS00305 Genome accession   NZ_CP034008
Coordinates   56848..58476 (-) Length   542 a.a.
NCBI ID   WP_156667967.1    Uniprot ID   -
Organism   Staphylococcus aureus strain P1D5C2     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 51848..63476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFD69_RS00280 (EFD69_00300) - 53594..54679 (-) 1086 WP_000868132.1 tyrosine-type recombinase/integrase -
  EFD69_RS00285 (EFD69_00305) - 54720..55037 (-) 318 WP_000659050.1 JAB domain-containing protein -
  EFD69_RS00290 (EFD69_00310) - 55058..55564 (-) 507 WP_001092169.1 DUF1643 domain-containing protein -
  EFD69_RS00295 (EFD69_00315) - 55582..55893 (-) 312 WP_000700853.1 DUF960 family protein -
  EFD69_RS00300 (EFD69_00320) - 55980..56330 (-) 351 WP_000859155.1 SAUGI family uracil-DNA glycosylase inhibitor -
  EFD69_RS00305 (EFD69_00325) ccrB 56848..58476 (-) 1629 WP_156667967.1 cassette chromosome recombinase CcrB Machinery gene
  EFD69_RS00310 (EFD69_00330) ccrA 58498..59847 (-) 1350 WP_000815646.1 cassette chromosome recombinase CcrA Machinery gene
  EFD69_RS00315 (EFD69_00335) cch1 60081..61874 (-) 1794 WP_000195105.1 cassette chromosome replicative helicase -
  EFD69_RS00320 (EFD69_00340) ssb 61874..62170 (-) 297 WP_000273824.1 cassette chromosome ssDNA-binding protein -
  EFD69_RS00325 (EFD69_00345) - 62363..63409 (-) 1047 WP_001060127.1 hypothetical protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62650.81 Da        Isoelectric Point: 9.8600

>NTDB_id=327875 EFD69_RS00305 WP_156667967.1 56848..58476(-) (ccrB) [Staphylococcus aureus strain P1D5C2]
MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMNRPELQRILKDAKEGYIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPNSKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQILEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYD
EVQIKLNNLIKSIEDNPDLTSVIRPSIQKYEKQLNDITNQINQLKNQQNEDKPLFDAKEISKLLQHIFHDIKHIEKSRLK
ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYLTI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=327875 EFD69_RS00305 WP_156667967.1 56848..58476(-) (ccrB) [Staphylococcus aureus strain P1D5C2]
ATGCAACAACTTAAAACAAAACGTGTCGGTATCTATGTACGTGTATCAACAGAAATGCAAAGCACAGAAGGTTATAGTAT
CGACGGACAAATCAATCAAATCAAAGAATACTGTGACTTCCATCATTTTGAAGTTAAAGATATATACGCTGACCGTGGTA
TTTCAGGTAAATCTATGAATCGACCTGAGCTCCAACGTATATTGAAGGATGCGAAAGAAGGCTATATCGACTGTGTTATG
GTCTACAAAACAAACCGATTAGCTCGTAATACATCTGATCTTCTCAAAATTGTCGAAGATTTACACAAACAAAATGTCGA
ATTTTTCAGTTTATCAGAGCGTATGGAAGTCAATACTTCATCGGGTAAGCTCATGTTACAAATACTTGCGAGTTTCTCAG
AATTCGAACGTAATAACATTGTCGAGAATGTATTTATGGGTCAAACGAGACGTGCCCAAGAAGGCTATTATCAAGGCAAT
TTGCCGCTGGGCTATGACAAAATACCTAATAGTAAACATGAACTGATGATTAATCAACATGAAGCTAATATTGTGAAATA
TATATTCGAGTCCTATGCCAAAGGCCATGGCTATCGTAAAATAGCCAATGCATTAAATCACAAAGGCTATGTCACTAAAA
AGGGTAAACCTTTTAGTATTAGTTCTATCACATATATATTAGCTAACCCATTCTATATCGGCAAAATTCAATTTGCGAAA
TACAAAGATTGGAGTGAAAAACGTCGTAAAGGGCTTAATGATAAACCAGTGATAGCTGAAGGTAAGCATTCCCCCATTAT
TAATCAAGATTTATGGGATAAAGTACAAATGCGTAAAAAACAAGTCAGTCAAAAACCCCAAGTCCATGGCAAAGGAACGA
ATCTGCTTACAGGCATTATTCACTGTCCCCAATGTGGCGCACCTATGGCAGCAAGCAATACCACGAATACACTTAAAGAC
GGGACTAAGAAACGTATTCGTTACTATTCATGTAGTAATTTTCGGAACAAGGGTTCCAAAGTATGTTCGGCAAACAGTGT
AAGAGCTGATGTGATTGAAGATTATGTGATGAAGCAAATACTTGAAATAGTCAAAAGTGATAAAGTCATTCAACGCGTAG
TAACACACGTCAATCAAGAAAATCAAGTTGATGGCGCTGCACTTCATCACGATATTGCTTATAAGCAACAACAATATGAT
GAAGTACAAATCAAACTAAATAACTTGATTAAAAGCATCGAGGATAATCCGGACTTAACATCAGTAATCAGACCAAGTAT
TCAAAAATATGAAAAGCAACTCAATGACATTACGAATCAAATCAACCAACTCAAAAATCAACAAAATGAAGATAAGCCTT
TATTTGATGCCAAAGAAATCAGTAAACTATTACAACACATCTTTCATGATATTAAGCACATAGAAAAATCTCGACTCAAA
GCATTGTATCTATCAGTGATTGATCGCATTGATATTAAAAAAGATGGTAATCATAAAAAACAATTCTATGTCACACTCAA
ACTTAATAACGAAATCATAAAACAACTTTTCAATAATAAACAACTCGACGAAGTGCATCTCAGCACTTCGTCTTTGTTTT
TGCCCCAAACACTATATCTTACTATTTAG

Domains

Predicted by InterProScan.

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)

Recombinase (Recombinase)

(180-280)

Resolvase, N terminal domain (Resolvase)

(11-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

99.815

100

0.998

Multiple sequence alignment