Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SP670_RS00575 Genome accession   NC_014498
Coordinates   90939..91709 (+) Length   256 a.a.
NCBI ID   WP_000616164.1    Uniprot ID   Q97TA7
Organism   Streptococcus pneumoniae 670-6B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 85939..96709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP670_RS00555 (SP670_0109) - 87859..88296 (+) 438 WP_000076487.1 CoA-binding protein -
  SP670_RS14030 (SP670_0110) - 88337..88585 (+) 249 WP_000692961.1 hypothetical protein -
  SP670_RS00565 (SP670_0111) - 88614..89624 (-) 1011 WP_000009168.1 YeiH family protein -
  SP670_RS00570 (SP670_0112) - 89773..90942 (+) 1170 WP_000366342.1 pyridoxal phosphate-dependent aminotransferase -
  SP670_RS00575 (SP670_0113) recO 90939..91709 (+) 771 WP_000616164.1 DNA repair protein RecO Machinery gene
  SP670_RS00580 (SP670_0114) plsX 91706..92698 (+) 993 WP_000717462.1 phosphate acyltransferase PlsX -
  SP670_RS00585 (SP670_0115) - 92704..92937 (+) 234 WP_000136447.1 acyl carrier protein -
  SP670_RS00590 (SP670_0116) - 92974..93273 (+) 300 Protein_115 transposase -
  SP670_RS00595 (SP670_0117) blpU 93476..93706 (+) 231 WP_001093077.1 bacteriocin-like peptide BlpU -
  SP670_RS14415 (SP670_0118) - 93709..93834 (+) 126 WP_001817770.1 PncF family bacteriocin immunity protein -
  SP670_RS00610 (SP670_0120) comA 94421..96574 (+) 2154 WP_000668303.1 peptide cleavage/export ABC transporter ComA Regulator

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29787.35 Da        Isoelectric Point: 5.8959

>NTDB_id=32784 SP670_RS00575 WP_000616164.1 90939..91709(+) (recO) [Streptococcus pneumoniae 670-6B]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=32784 SP670_RS00575 WP_000616164.1 90939..91709(+) (recO) [Streptococcus pneumoniae 670-6B]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTATTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATAAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAACTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97TA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.219

100

0.992

Multiple sequence alignment