Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   FOA56_RS01335 Genome accession   NZ_CP041678
Coordinates   283240..284736 (+) Length   498 a.a.
NCBI ID   WP_024232510.1    Uniprot ID   -
Organism   Escherichia coli strain ESBL 15     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 278240..289736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOA56_RS01305 (FOA56_01305) tusA 278487..278732 (+) 246 WP_000130621.1 sulfurtransferase TusA -
  FOA56_RS01310 (FOA56_01310) zntA 278834..281032 (-) 2199 WP_000106508.1 Zn(II)/Cd(II)/Pb(II) translocating P-type ATPase ZntA -
  FOA56_RS01315 (FOA56_01315) yhhN 281106..281732 (-) 627 WP_000964718.1 lysoplasmalogenase -
  FOA56_RS01320 (FOA56_01320) yhhM 281873..282232 (+) 360 WP_000042900.1 DUF2500 domain-containing protein -
  FOA56_RS01325 (FOA56_01325) yhhL 282235..282504 (-) 270 WP_001295207.1 DUF1145 family protein -
  FOA56_RS01330 (FOA56_01330) rsmD 282494..283090 (-) 597 WP_000743193.1 16S rRNA (guanine(966)-N(2))-methyltransferase -
  FOA56_RS01335 (FOA56_01335) pilA 283240..284736 (+) 1497 WP_024232510.1 signal recognition particle-docking protein FtsY Machinery gene
  FOA56_RS01340 (FOA56_01340) ftsE 284739..285407 (+) 669 WP_000617723.1 cell division ATP-binding protein FtsE -
  FOA56_RS01345 (FOA56_01345) ftsX 285400..286458 (+) 1059 WP_001042003.1 permease-like cell division protein FtsX -
  FOA56_RS01350 (FOA56_01350) rpoH 286703..287557 (+) 855 WP_000130217.1 RNA polymerase sigma factor RpoH -
  FOA56_RS01355 (FOA56_01355) livJ 287828..288931 (+) 1104 WP_001021989.1 branched chain amino acid ABC transporter substrate-binding protein LivJ -
  FOA56_RS01360 (FOA56_01360) panM 289130..289513 (-) 384 WP_000778785.1 aspartate 1-decarboxylase autocleavage activator PanM -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 54755.62 Da        Isoelectric Point: 4.1468

>NTDB_id=327802 FOA56_RS01335 WP_024232510.1 283240..284736(+) (pilA) [Escherichia coli strain ESBL 15]
MAKEKKRGFFSWLGFGQKEQTPEKETEVQNEQPVVEEIVQAQEPVKVSEQAVEEQPQAHTEAEAETFAADVVEVTEQVVE
SEKAQPEAEVVAQPEPVVEETPEPVAIEREELPLPEDVNAEEVSPEEWQAEAETVEIVEAAEEEAAKEEITDEELEAQAL
AAEAAEEAVMVVPPAEEEQPVEEIAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIAD
VGVETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVEGKTPFVILMVGVNGVGKTTTIGKLARQFEQ
QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKK
IVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIED
LRPFKADDFIEALFARED

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=327802 FOA56_RS01335 WP_024232510.1 283240..284736(+) (pilA) [Escherichia coli strain ESBL 15]
ATGGCGAAAGAAAAAAAACGTGGCTTTTTTTCCTGGCTGGGCTTTGGTCAAAAAGAGCAGACCCCGGAAAAAGAGACAGA
AGTTCAGAATGAACAACCGGTTGTAGAAGAAATCGTTCAGGCGCAAGAGCCTGTGAAGGTTTCGGAACAAGCCGTTGAAG
AGCAGCCGCAGGCGCATACTGAAGCCGAGGCGGAAACTTTTGCTGCCGACGTTGTGGAAGTCACTGAACAGGTTGTTGAA
AGTGAAAAAGCGCAGCCTGAAGCGGAAGTTGTTGCACAGCCGGAACCGGTCGTAGAAGAAACGCCGGAGCCAGTGGCTAT
CGAACGTGAAGAGCTGCCGTTGCCGGAAGACGTCAACGCCGAAGAGGTTTCGCCAGAAGAGTGGCAGGCTGAAGCGGAAA
CTGTAGAGATTGTCGAAGCGGCGGAAGAAGAAGCGGCTAAAGAAGAAATCACCGACGAAGAGCTGGAAGCACAGGCGCTG
GCAGCCGAAGCGGCAGAAGAGGCGGTGATGGTGGTTCCTCCGGCAGAAGAAGAGCAGCCGGTGGAAGAAATCGCTCAGGA
GCAGGAAAAACCAACCAAAGAAGGTTTCTTCGCGCGCCTGAAACGCAGCCTGTTAAAAACCAAAGAAAATCTCGGTTCCG
GATTTATCAGCCTGTTCCGCGGTAAAAAAATCGACGATGATCTGTTTGAGGAGCTGGAAGAGCAGCTTTTGATCGCCGAT
GTGGGCGTGGAAACCACACGTAAAATTATCACCAATCTGACGGAAGGCGCATCCCGCAAGCAGCTTCGTGATGCCGAGGC
GCTCTATGGCCTGCTGAAAGAAGAGATGGGCGAGATTCTGGCGAAAGTCGATGAGCCGCTGAATGTTGAAGGTAAAACGC
CGTTCGTGATCCTGATGGTGGGCGTCAACGGTGTGGGTAAAACCACGACGATTGGTAAGCTGGCACGTCAGTTTGAGCAG
CAGGGTAAATCGGTGATGCTGGCGGCGGGCGATACTTTCCGTGCAGCAGCGGTTGAACAGCTTCAGGTCTGGGGGCAGCG
CAACAATATTCCGGTGATTGCCCAGCATACCGGGGCGGATTCCGCCTCTGTTATCTTCGACGCCATTCAGGCAGCTAAAG
CGCGTAATATCGACGTCCTGATTGCCGATACCGCCGGACGCCTGCAGAACAAATCGCACCTGATGGAAGAGTTGAAGAAA
ATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCGCCGCATGAAGTTATGCTGACTATCGATGCCAGCACCGGGCAGAA
CGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACGCTAACGAAACTGGACGGCACGGCGA
AAGGCGGGGTAATTTTCTCGGTGGCTGACCAGTTTGGTATCCCTATCCGCTACATTGGTGTCGGCGAACGTATTGAGGAT
TTGCGTCCGTTTAAGGCGGACGACTTTATAGAGGCACTTTTTGCCCGAGAGGATTAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(294-494)

SRP54-type protein, helical bundle domain (SRP54_N)

(211-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

48.831

77.309

0.378

Multiple sequence alignment