Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   FNV59_RS37540 Genome accession   NZ_CP041650
Coordinates   8307234..8308442 (+) Length   402 a.a.
NCBI ID   WP_097286403.1    Uniprot ID   A0ABU3UJU6
Organism   Streptomyces sp. RLB1-8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8302234..8313442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNV59_RS37525 (FNV59_38090) - 8303116..8304534 (+) 1419 WP_097286400.1 sugar porter family MFS transporter -
  FNV59_RS37530 (FNV59_38095) - 8304622..8305593 (-) 972 WP_060901223.1 LLM class flavin-dependent oxidoreductase -
  FNV59_RS37535 (FNV59_38100) - 8305639..8307105 (-) 1467 WP_143603047.1 cytosine permease -
  FNV59_RS37540 (FNV59_38105) pilA 8307234..8308442 (+) 1209 WP_097286403.1 signal recognition particle-docking protein FtsY Machinery gene
  FNV59_RS37545 (FNV59_38110) - 8308543..8309205 (-) 663 WP_097286404.1 bifunctional DNA primase/polymerase -
  FNV59_RS37550 (FNV59_38115) - 8309664..8311139 (+) 1476 WP_054235371.1 NsdA -
  FNV59_RS37555 (FNV59_38120) - 8311477..8312814 (+) 1338 WP_060901219.1 ammonium transporter -
  FNV59_RS37560 (FNV59_38125) - 8312811..8313149 (+) 339 WP_054235369.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 42620.78 Da        Isoelectric Point: 4.3980

>NTDB_id=327676 FNV59_RS37540 WP_097286403.1 8307234..8308442(+) (pilA) [Streptomyces sp. RLB1-8]
METVILAVVIAVVVIGALGGLVIGSRRKKPLPPAPPTTPDITAPPAEPHIGDEAEIPHDEERRTIEEVDLPGGSAAPVVV
EEPEPVVEAPAIEIPEPTAGRLVRLRARLSRSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVQPTQELVERLRE
RVKVLGTRTPDELRTLLREELLQLLVPEFDRTVKTDSNLDTPGIVMVVGVNGTGKTTTTGKLARVLVADGKNVVLGAADT
FRAAAADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEGIEEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHAPLD
EVLLVLDATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLVGLGEGADDLAPFEPEAFVDALI
GE

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=327676 FNV59_RS37540 WP_097286403.1 8307234..8308442(+) (pilA) [Streptomyces sp. RLB1-8]
ATGGAAACCGTCATCCTTGCTGTAGTCATCGCCGTGGTCGTGATCGGCGCACTCGGCGGGCTCGTCATCGGCAGTCGCCG
CAAGAAGCCGCTGCCCCCGGCGCCCCCCACCACGCCCGACATCACCGCCCCTCCCGCCGAGCCGCACATCGGCGACGAGG
CCGAGATCCCGCACGACGAAGAGCGCCGGACGATAGAGGAGGTGGATCTCCCGGGCGGCTCGGCCGCGCCGGTCGTCGTC
GAGGAACCCGAACCCGTTGTCGAAGCTCCCGCGATCGAGATCCCGGAGCCGACCGCGGGACGCCTGGTGCGGCTGCGCGC
CCGCCTCTCGCGCTCGCAGAACGCGCTCGGCAAGGGGCTGCTCACGCTCCTCTCGCGCGAGCACCTCGACGAGGACACCT
GGGAGGAGATCGAGGACACGCTGCTGACCGCCGACGTCGGCGTGCAGCCCACCCAGGAGCTGGTCGAGCGGCTGCGCGAG
CGCGTGAAGGTGCTCGGTACGCGGACGCCCGACGAGCTGCGCACCCTGCTGCGCGAGGAGCTGCTGCAGCTTCTCGTCCC
CGAGTTCGACCGTACGGTCAAGACCGACTCGAACCTCGACACCCCGGGCATCGTGATGGTCGTCGGTGTCAACGGCACCG
GCAAGACCACCACCACCGGCAAGCTCGCCCGCGTCCTCGTCGCGGACGGCAAGAACGTGGTGCTCGGCGCCGCCGACACC
TTCCGTGCCGCCGCCGCCGACCAGCTGCAGACCTGGGGCGAGCGCGTGGGCGCCCGTACCGTGCGGGGCCCCGAGGGCGG
CGACCCCGCCTCGATCGCCTTCGACGCGGTCAAGGAGGGCATCGAGGAGGGTGCCGACGTCGTCCTCATCGACACGGCCG
GACGACTTCACACCAAGACCGGGCTCATGGACGAGCTCGGCAAGGTCAAGCGTGTCGTCGAGAAGCACGCCCCGCTCGAC
GAGGTGCTGCTGGTCCTCGACGCCACGACCGGCCAGAACGGTCTGGTGCAGGCCCGCGTCTTCGCCGAGGTCGTCGACAT
CACCGGCATCGTGCTGACCAAGCTCGACGGCACCGCGAAGGGCGGCATCGTGATCGCGGTCCAGCGCGAGCTGGGGGTGC
CGGTCAAGCTGGTGGGTCTGGGCGAGGGCGCGGACGATCTGGCGCCGTTCGAGCCGGAGGCGTTCGTTGACGCCCTTATC
GGAGAGTGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(204-400)

SRP54-type protein, helical bundle domain (SRP54_N)

(116-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

42.693

86.816

0.371

Multiple sequence alignment