Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   FNV59_RS20555 Genome accession   NZ_CP041650
Coordinates   4457462..4459390 (+) Length   642 a.a.
NCBI ID   WP_143601566.1    Uniprot ID   A0ABU3UUD9
Organism   Streptomyces sp. RLB1-8     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4452462..4464390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNV59_RS20540 (FNV59_20840) - 4453554..4453859 (+) 306 WP_054233549.1 hypothetical protein -
  FNV59_RS20545 (FNV59_20845) - 4454072..4455526 (+) 1455 WP_097284617.1 FGGY family carbohydrate kinase -
  FNV59_RS20550 (FNV59_20850) rcrP 4455729..4457462 (+) 1734 WP_054233616.1 ABC transporter ATP-binding protein Regulator
  FNV59_RS20555 (FNV59_20855) rcrQ 4457462..4459390 (+) 1929 WP_143601566.1 ABC transporter ATP-binding protein Regulator
  FNV59_RS20560 (FNV59_20860) - 4459759..4461069 (-) 1311 WP_143601567.1 RNA polymerase sigma factor -
  FNV59_RS20565 (FNV59_20865) dnaG 4461271..4463175 (-) 1905 WP_054233545.1 DNA primase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69536.30 Da        Isoelectric Point: 6.4361

>NTDB_id=327633 FNV59_RS20555 WP_143601566.1 4457462..4459390(+) (rcrQ) [Streptomyces sp. RLB1-8]
MAGPMGRMMAGGGPDQRSMDFKVSGKRLLAQFKPERVTMYGMLVAVVLSVALSVVGPKILGKATDLVFAGIIGRQMPAGA
TKAEVLASMRRRGEGGMADMLAGTDFTPGKGIDFGAVGNVLLLALCTFLLAGLLMAVATRLVNRAVNKTVYHMREDLQAK
LSRLPLSYFDKRQRGEVLSRATNDIDNIQQTLQQSMGQLVNSLLTIIGVLAMMFWVSWLLALVALVTVPLSFFVATRIGK
RSQPHFVQQWRTTGKLNAHIEEMYTGHTLVKVFGRQEESAAQFAEQNEKLYEAGFKAQFNSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEADPVPAARPDELRGRVALE
NVSFRYDPEKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVTGGRITLDGVDIASMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASREVTRGEIEEAARAAHADRFIRTLPEGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHAELLAANGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=327633 FNV59_RS20555 WP_143601566.1 4457462..4459390(+) (rcrQ) [Streptomyces sp. RLB1-8]
ATGGCCGGGCCCATGGGACGCATGATGGCCGGGGGCGGCCCCGATCAGCGCTCGATGGATTTCAAGGTGTCCGGGAAGAG
GCTCCTGGCCCAGTTCAAACCCGAACGCGTCACCATGTACGGAATGCTGGTCGCCGTCGTCCTGAGCGTGGCGCTCTCGG
TGGTCGGACCGAAGATCCTCGGCAAGGCCACCGACCTGGTCTTCGCGGGCATCATCGGGCGGCAGATGCCGGCCGGTGCC
ACCAAGGCCGAGGTCCTCGCCTCCATGCGCAGGCGCGGTGAGGGCGGCATGGCCGACATGCTCGCCGGGACGGACTTCAC
CCCCGGCAAGGGCATCGACTTCGGTGCCGTCGGCAACGTACTGCTGCTCGCGCTCTGTACGTTTTTGCTGGCCGGCCTGC
TGATGGCGGTGGCGACGCGCCTGGTGAACCGGGCCGTCAACAAGACCGTCTACCACATGCGCGAGGACCTGCAGGCGAAG
CTCTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGCCAGCGCGGTGAGGTGCTCAGCCGCGCCACGAACGACATCGACAA
CATCCAGCAGACCCTGCAGCAGTCGATGGGCCAGCTGGTGAACTCCCTGCTGACCATCATCGGCGTGCTCGCGATGATGT
TCTGGGTGTCGTGGCTGCTCGCGCTGGTCGCGCTCGTCACGGTCCCGCTCTCCTTCTTCGTCGCCACGCGCATCGGCAAG
CGCTCGCAGCCGCACTTCGTGCAGCAGTGGCGCACCACCGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGGCA
CACGCTGGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCGGCTCAGTTCGCCGAGCAGAACGAGAAGTTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTATGTGCTGGTGGCG
GTGGTCGGCGGTCTGCGTGTCGCGTCCGGCTCGCTGTCGATCGGCGACGTCCAGGCCTTCATCCAGTACTCCCGCCAGTT
CTCGATGCCGCTGACACAGGTCGCCTCGATGGCGAACCTCGTGCAGTCCGGTGTCGCGTCCGCGGAGCGCATCTTCGAGC
TCCTCGACGCTGAGGAGCAGGAGGCCGACCCGGTGCCGGCGGCGCGCCCCGACGAGCTGCGCGGGCGGGTGGCGCTGGAG
AACGTGTCCTTCCGCTACGACCCCGAGAAGCCGCTCATCGAAGACCTGTCGCTGAAGGTGGAGCCGGGCCACACGGTGGC
GATCGTCGGCCCGACCGGCGCGGGCAAGACCACGCTGGTGAACCTCCTGATGCGGTTCTACGACGTCACCGGCGGCCGGA
TCACCCTCGACGGGGTCGACATCGCGTCCATGTCCCGGGACGAACTCCGGGCCGGGATCGGGATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACGATCGCGGAGAACATCGCGTACGGGGCCTCGCGTGAGGTCACCCGCGGGGAGATCGAGGAGGC
GGCGCGGGCCGCGCACGCGGACCGTTTCATCCGCACGCTCCCCGAGGGCTACGACACCGTCATCGACGACGAGGGGACGG
GGGTCAGCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTCGTCCTCGACGAG
GCGACCAGTTCCGTCGACACCCGTACGGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTCGCGCACGGGCGGACGTCGTT
CGTGATCGCCCACCGGCTCTCCACGATCCGGGACGCGGACACCATCCTCGTGATGGAGAACGGGTCGATCGTCGAGCAGG
GCGCGCATGCGGAGCTGTTGGCGGCGAACGGGGCGTACGCGCGCCTCTACAAGGCCCAGTTCGCCCAGGCGGTGGCCGAG
GTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(43-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.453

96.262

0.389

Multiple sequence alignment