Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   FNV59_RS20550 Genome accession   NZ_CP041650
Coordinates   4455729..4457462 (+) Length   577 a.a.
NCBI ID   WP_054233616.1    Uniprot ID   A0ABU3UUE0
Organism   Streptomyces sp. RLB1-8     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4450729..4462462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNV59_RS20520 (FNV59_20820) - 4451233..4452678 (+) 1446 WP_143601565.1 PHB depolymerase family esterase -
  FNV59_RS20540 (FNV59_20840) - 4453554..4453859 (+) 306 WP_054233549.1 hypothetical protein -
  FNV59_RS20545 (FNV59_20845) - 4454072..4455526 (+) 1455 WP_097284617.1 FGGY family carbohydrate kinase -
  FNV59_RS20550 (FNV59_20850) rcrP 4455729..4457462 (+) 1734 WP_054233616.1 ABC transporter ATP-binding protein Regulator
  FNV59_RS20555 (FNV59_20855) rcrQ 4457462..4459390 (+) 1929 WP_143601566.1 ABC transporter ATP-binding protein Regulator
  FNV59_RS20560 (FNV59_20860) - 4459759..4461069 (-) 1311 WP_143601567.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62615.76 Da        Isoelectric Point: 6.1291

>NTDB_id=327632 FNV59_RS20550 WP_054233616.1 4455729..4457462(+) (rcrP) [Streptomyces sp. RLB1-8]
MLIRLLRTYLSPYKKPIALLVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILSFGALMIGISLIQVVCNIGAVYYGA
RTASSVGRDIRAAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLTLMTFTLLVSAPIMCVGGIVLALGLDVPLSAV
LVAVVPVLGIGVTLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDDYEKDRFESANAQLTEVSLGTGRMLAL
MFPMVMTVVNLSSIAVVWFGAHRIASGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIEEVLDTSSSVVP
PSAPVVELRRHGHLEIRGAGFRYPGAEEPVLKSIELVARPGETTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVDVS
TVEPKLLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKGFVERLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALSQETAEATVVIVAQRVSTIRDADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=327632 FNV59_RS20550 WP_054233616.1 4455729..4457462(+) (rcrP) [Streptomyces sp. RLB1-8]
GTGCTCATACGACTGCTTCGGACCTACCTCAGTCCGTACAAGAAACCCATCGCTCTCCTCGTGCTGCTGCAGTTCCTGCA
GACCTGCGCAACCCTGTACCTGCCGACCCTGAACGCACACATCATTGACAACGGTGTCGTCAAGGGAGACACGGGTTACA
TCCTGTCCTTCGGTGCCCTGATGATCGGGATCTCGCTGATCCAGGTCGTCTGCAACATCGGCGCCGTCTACTACGGCGCC
CGTACGGCGTCCTCCGTCGGCCGGGACATCCGGGCCGCCGTCTTCGACCGGGTGCAGTCCTTCTCCGCACGCGAGGTGGG
CCACTTCGGAGCCCCCTCCCTGATCACCCGCACCACCAATGACGTCCAGCAGGTGCAGATGCTCACGCTGATGACGTTCA
CCCTGCTGGTGTCGGCGCCGATCATGTGTGTCGGCGGCATCGTGCTGGCCCTCGGCCTGGACGTGCCGCTCTCCGCGGTC
CTGGTCGCCGTGGTGCCGGTGCTCGGCATCGGAGTGACCCTGATCGTGCGCCGGCTGCGCCCGCTGTTCAGGACCATGCA
GGTGCGCCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTCCGCGACG
ACTACGAGAAGGACCGCTTCGAGTCCGCCAACGCCCAGCTGACCGAGGTGTCCCTCGGCACCGGCCGGATGCTCGCCCTG
ATGTTCCCGATGGTCATGACCGTCGTGAACCTCTCGTCGATCGCCGTGGTCTGGTTCGGCGCCCACCGCATCGCCAGCGG
CGGCATGCAGATCGGCGACCTGACCGCGTTCCTCGCCTACCTCATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGTGCCGAGCGCATCGAAGAGGTCCTGGACACCTCGTCGAGCGTCGTGCCG
CCGAGCGCGCCCGTCGTGGAGCTGCGGCGCCACGGCCACCTGGAGATCCGCGGCGCCGGGTTCCGCTACCCGGGTGCCGA
GGAGCCCGTCCTGAAGTCCATCGAACTGGTGGCGCGGCCGGGTGAGACGACCGCCGTGATCGGGTCGACGGGCAGCGGCA
AGTCGACGCTGCTCGGGCTCGTGCCCCGGCTCTTCGACGCCACCGACGGAGAAGTCCTCGTCGACGGCGTGGACGTGTCG
ACCGTCGAGCCGAAGCTGCTCGCCAGAACGGTCGGGCTCGTCCCCCAGAAGCCCTACCTCTTCGCGGGGACGGTCGCCAC
CAACCTCCGCTACGGCAATCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TGGAGCGGCTGGAGAACGGCCTGGACTCGCCGATCGCGCAGGGCGGCACCAACGTCTCCGGTGGTCAGCGCCAGCGCCTC
GCCATCGCCCGCACCCTCGTCCAGCGCCCCGAGATCTACCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCGACCGA
CGCGGCACTGCGCGCGGCGCTCTCCCAGGAGACCGCCGAGGCGACCGTGGTGATCGTCGCCCAGCGGGTGTCGACCATTC
GGGACGCCGACCGGATCGTGGTCCTCGACGAGGGCCGGGTGGTGGGCACGGGCCGTCACCACGAGCTCATGGCCGACAAC
GAGACCTATCGGGAGATCGTTCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.823

100

0.412