Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FNZ59_RS09415 Genome accession   NZ_CP041628
Coordinates   1909977..1910492 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain PE15     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1904977..1915492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNZ59_RS09390 (FNZ59_09490) ygaZ 1905376..1906113 (+) 738 WP_000445651.1 L-valine exporter subunit YgaZ -
  FNZ59_RS09395 (FNZ59_09495) ygaH 1906103..1906438 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  FNZ59_RS09400 (FNZ59_09500) emrR 1906529..1907059 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  FNZ59_RS09405 (FNZ59_09505) emrA 1907186..1908358 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  FNZ59_RS09410 (FNZ59_09510) emrB 1908375..1909913 (+) 1539 WP_058101257.1 multidrug efflux MFS transporter permease subunit EmrB -
  FNZ59_RS09415 (FNZ59_09515) luxS 1909977..1910492 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  FNZ59_RS09420 (FNZ59_09520) gshA 1910642..1912198 (-) 1557 WP_077491682.1 glutamate--cysteine ligase -
  FNZ59_RS09425 (FNZ59_09525) yqaA 1912271..1912699 (-) 429 WP_001287454.1 YqaA family protein -
  FNZ59_RS09430 (FNZ59_09530) yqaB 1912696..1913262 (-) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  FNZ59_RS09460 (FNZ59_09560) csrA 1914720..1914905 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=327545 FNZ59_RS09415 WP_001130211.1 1909977..1910492(-) (luxS) [Escherichia coli strain PE15]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=327545 FNZ59_RS09415 WP_001130211.1 1909977..1910492(-) (luxS) [Escherichia coli strain PE15]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731