Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   TGR7_RS14990 Genome accession   NC_011901
Coordinates   3130630..3131619 (+) Length   329 a.a.
NCBI ID   WP_012639521.1    Uniprot ID   B8GPD8
Organism   Thioalkalivibrio sulfidiphilus HL-EbGr7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3125630..3136619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TGR7_RS14970 (Tgr7_2984) - 3125822..3126703 (-) 882 WP_012639517.1 NAD(P)-dependent oxidoreductase -
  TGR7_RS14975 (Tgr7_2985) rsmD 3126882..3127499 (-) 618 WP_012639518.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  TGR7_RS14980 (Tgr7_2986) - 3127699..3128997 (-) 1299 WP_049764686.1 pitrilysin family protein -
  TGR7_RS14985 (Tgr7_2987) - 3129166..3130566 (-) 1401 WP_012639520.1 pitrilysin family protein -
  TGR7_RS14990 (Tgr7_2988) pilA 3130630..3131619 (+) 990 WP_012639521.1 signal recognition particle-docking protein FtsY Machinery gene
  TGR7_RS14995 (Tgr7_2989) ftsE 3131689..3132369 (+) 681 WP_012639522.1 cell division ATP-binding protein FtsE -
  TGR7_RS15000 (Tgr7_2990) ftsX 3132366..3133346 (+) 981 WP_012639523.1 permease-like cell division protein FtsX -
  TGR7_RS15005 (Tgr7_2991) rpoH 3133547..3134392 (+) 846 WP_012639524.1 RNA polymerase sigma factor RpoH -
  TGR7_RS15010 (Tgr7_2993) ccoS 3134711..3134920 (-) 210 WP_012639526.1 cbb3-type cytochrome oxidase assembly protein CcoS -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 35630.00 Da        Isoelectric Point: 8.5343

>NTDB_id=32754 TGR7_RS14990 WP_012639521.1 3130630..3131619(+) (pilA) [Thioalkalivibrio sulfidiphilus HL-EbGr7]
MFGFRKNRPEGETKSPSPAQSEGLFSRLRKGLSKTGQALTEGMATLVMGRKAIDDELLEELETRLLMADVGVEATQRILD
GLTRRVARKELTDADALFKALHEAMTEILVPVAHPLQIDASKKPFVILVVGINGAGKTTTIGKLAKRLQNEGRSVMLAAG
DTFRAAAVEQLQVWGERNRIPVITQGKGADSASVIYDAVQAAKARGVDVLIADTAGRLHTQTNLMEEMKKVRRVIQRLDP
DAPHETLLVVDAGTGQNALNQAREFHQAVNLTGLAVTKLDGTAKGGIVFAMAERMGIPIRFIGVGEGIDDLRTFRADDFV
KALLSTDEQ

Nucleotide


Download         Length: 990 bp        

>NTDB_id=32754 TGR7_RS14990 WP_012639521.1 3130630..3131619(+) (pilA) [Thioalkalivibrio sulfidiphilus HL-EbGr7]
ATGTTCGGTTTCAGAAAAAATCGCCCCGAGGGCGAAACCAAGTCCCCGTCGCCTGCGCAAAGCGAGGGCCTATTCTCCCG
GCTGCGCAAGGGTTTGTCCAAGACAGGCCAGGCGCTCACCGAGGGCATGGCCACCCTGGTCATGGGCCGCAAGGCCATCG
ACGACGAGCTGCTGGAGGAGCTGGAGACCCGCCTGCTCATGGCCGACGTGGGCGTGGAGGCCACCCAGCGCATCCTGGAC
GGACTCACCCGCCGGGTGGCCCGCAAGGAGCTCACCGACGCCGATGCGTTGTTTAAGGCCCTGCACGAGGCCATGACCGA
GATCCTGGTCCCCGTGGCACACCCACTGCAGATCGATGCCAGCAAAAAGCCCTTCGTGATCCTGGTGGTGGGCATCAACG
GCGCCGGCAAGACCACCACCATCGGCAAGCTGGCCAAGCGCCTGCAGAACGAGGGCCGCTCGGTGATGCTGGCCGCCGGC
GATACCTTCCGCGCCGCCGCCGTGGAACAGCTGCAGGTCTGGGGCGAGCGCAACCGGATCCCGGTCATCACCCAGGGCAA
GGGCGCGGATTCGGCCTCGGTGATCTACGACGCCGTGCAGGCCGCCAAGGCCCGGGGCGTGGACGTGCTCATCGCCGACA
CGGCGGGCCGCCTGCACACCCAGACCAACCTCATGGAAGAAATGAAGAAGGTGCGCCGGGTGATCCAGCGCCTGGATCCG
GACGCCCCCCACGAGACCCTGCTGGTGGTGGACGCCGGCACCGGCCAGAACGCCCTGAACCAGGCCCGGGAGTTCCACCA
GGCCGTGAACCTCACCGGACTCGCGGTGACCAAGCTGGACGGTACCGCCAAGGGCGGCATCGTGTTCGCCATGGCCGAGC
GCATGGGCATACCGATCCGGTTCATCGGTGTCGGCGAAGGGATCGATGACCTGCGCACCTTCCGTGCCGATGACTTCGTC
AAGGCCCTGCTGAGCACCGATGAACAGTAA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(40-105)

SRP54-type protein, GTPase domain (SRP54)

(124-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B8GPD8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

56.291

91.793

0.517

Multiple sequence alignment