Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   EG882_RS18840 Genome accession   NZ_CP033967
Coordinates   3726073..3726651 (-) Length   192 a.a.
NCBI ID   WP_012117234.1    Uniprot ID   -
Organism   Bacillus velezensis strain 1B-23     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3721073..3731651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG882_RS18810 (EG882_18810) - 3721396..3722106 (+) 711 WP_015239530.1 YrpD family protein -
  EG882_RS18815 (EG882_18815) - 3722335..3722844 (-) 510 WP_015239529.1 mep operon protein MepB -
  EG882_RS18820 (EG882_18820) - 3722967..3723338 (-) 372 WP_015239528.1 iron chaperone -
  EG882_RS18825 (EG882_18825) - 3723365..3723733 (-) 369 WP_012117235.1 iron chaperone -
  EG882_RS18830 (EG882_18830) - 3724380..3725756 (-) 1377 WP_072588962.1 hypothetical protein -
  EG882_RS18835 (EG882_18835) - 3725760..3725945 (-) 186 WP_072588961.1 hypothetical protein -
  EG882_RS18840 (EG882_18840) comK 3726073..3726651 (-) 579 WP_012117234.1 competence protein ComK Regulator
  EG882_RS18845 (EG882_18845) - 3726967..3727200 (+) 234 WP_007409189.1 IDEAL domain-containing protein -
  EG882_RS18850 (EG882_18850) - 3727230..3728087 (-) 858 WP_032871127.1 SDR family oxidoreductase -
  EG882_RS18855 (EG882_18855) - 3728212..3729735 (+) 1524 WP_032866166.1 FAD-dependent oxidoreductase -
  EG882_RS18860 (EG882_18860) - 3729857..3731149 (+) 1293 WP_007409192.1 globin-coupled sensor protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22301.55 Da        Isoelectric Point: 8.1419

>NTDB_id=327501 EG882_RS18840 WP_012117234.1 3726073..3726651(-) (comK) [Bacillus velezensis strain 1B-23]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HVPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=327501 EG882_RS18840 WP_012117234.1 3726073..3726651(-) (comK) [Bacillus velezensis strain 1B-23]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATGTCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterProScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.812

100

0.828

Multiple sequence alignment