Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   EG882_RS16955 Genome accession   NZ_CP033967
Coordinates   3372641..3373237 (-) Length   198 a.a.
NCBI ID   WP_012117447.1    Uniprot ID   -
Organism   Bacillus velezensis strain 1B-23     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3367641..3378237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG882_RS16930 (EG882_16930) mobB 3368017..3368538 (-) 522 WP_124693066.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  EG882_RS16935 (EG882_16935) glp 3368499..3369791 (-) 1293 WP_124693067.1 gephyrin-like molybdotransferase Glp -
  EG882_RS16940 (EG882_16940) - 3369809..3370828 (-) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  EG882_RS16945 (EG882_16945) - 3370880..3371482 (-) 603 WP_025284661.1 molybdenum cofactor guanylyltransferase -
  EG882_RS16950 (EG882_16950) - 3371628..3372620 (+) 993 WP_124693068.1 sporulation protein -
  EG882_RS16955 (EG882_16955) rok 3372641..3373237 (-) 597 WP_012117447.1 transcriptional regulator Rok Regulator
  EG882_RS16960 (EG882_16960) - 3373690..3374148 (-) 459 WP_095353001.1 TlpA disulfide reductase family protein -
  EG882_RS16965 (EG882_16965) - 3374435..3375241 (+) 807 WP_038463800.1 mechanosensitive ion channel family protein -
  EG882_RS16970 (EG882_16970) - 3375275..3375520 (-) 246 WP_003154596.1 YkuS family protein -
  EG882_RS16975 (EG882_16975) - 3375581..3376705 (-) 1125 WP_046702332.1 N-acetyldiaminopimelate deacetylase -
  EG882_RS16980 (EG882_16980) dapD 3376776..3377486 (-) 711 WP_012117443.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  EG882_RS16985 (EG882_16985) - 3377568..3378023 (-) 456 WP_124693069.1 flavodoxin -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22495.54 Da        Isoelectric Point: 9.6909

>NTDB_id=327489 EG882_RS16955 WP_012117447.1 3372641..3373237(-) (rok) [Bacillus velezensis strain 1B-23]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
AQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=327489 EG882_RS16955 WP_012117447.1 3372641..3373237(-) (rok) [Bacillus velezensis strain 1B-23]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
GCACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATTAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment