Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EG882_RS16840 Genome accession   NZ_CP033967
Coordinates   3352455..3352739 (-) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain 1B-23     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3347455..3357739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG882_RS16820 (EG882_16820) ade 3347561..3349294 (-) 1734 WP_043021212.1 adenine deaminase -
  EG882_RS16825 (EG882_16825) ktrC 3349443..3350108 (-) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  EG882_RS16830 (EG882_16830) - 3350149..3350976 (-) 828 WP_015239773.1 gamma-glutamylcyclotransferase family protein -
  EG882_RS16835 (EG882_16835) - 3350978..3352282 (-) 1305 WP_007409646.1 ATP-binding protein -
  EG882_RS16840 (EG882_16840) abrB 3352455..3352739 (-) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  EG882_RS16850 (EG882_16850) mreBH 3353010..3354017 (+) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  EG882_RS16855 (EG882_16855) - 3354089..3354223 (+) 135 WP_003154559.1 protein YkpC -
  EG882_RS16860 (EG882_16860) - 3354324..3355556 (+) 1233 WP_007409644.1 aminopeptidase -
  EG882_RS16865 (EG882_16865) - 3355588..3356496 (-) 909 WP_124693063.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=327488 EG882_RS16840 WP_003154557.1 3352455..3352739(-) (abrB) [Bacillus velezensis strain 1B-23]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=327488 EG882_RS16840 WP_003154557.1 3352455..3352739(-) (abrB) [Bacillus velezensis strain 1B-23]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTTGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment