Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   EG882_RS11085 Genome accession   NZ_CP033967
Coordinates   2104190..2104957 (+) Length   255 a.a.
NCBI ID   WP_015240232.1    Uniprot ID   -
Organism   Bacillus velezensis strain 1B-23     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2099190..2109957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG882_RS11055 (EG882_11055) - 2099474..2101606 (+) 2133 WP_007408284.1 HD family phosphohydrolase -
  EG882_RS11060 (EG882_11060) ybeY 2101607..2102080 (+) 474 WP_012118016.1 rRNA maturation RNase YbeY -
  EG882_RS11065 (EG882_11065) - 2102061..2102435 (+) 375 WP_015240233.1 diacylglycerol kinase family protein -
  EG882_RS11070 (EG882_11070) - 2102559..2102969 (+) 411 WP_003152976.1 cytidine deaminase -
  EG882_RS11075 (EG882_11075) era 2102950..2103855 (+) 906 WP_007408285.1 GTPase Era -
  EG882_RS11080 (EG882_11080) - 2104010..2104153 (+) 144 WP_007408286.1 YqzL family protein -
  EG882_RS11085 (EG882_11085) recO 2104190..2104957 (+) 768 WP_015240232.1 DNA repair protein RecO Machinery gene
  EG882_RS11090 (EG882_11090) glyQ 2105259..2106146 (+) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  EG882_RS11095 (EG882_11095) glyS 2106139..2108178 (+) 2040 WP_124692835.1 glycine--tRNA ligase subunit beta -
  EG882_RS11100 (EG882_11100) ccpN 2108279..2108917 (+) 639 WP_003152989.1 transcriptional regulator CcpN -
  EG882_RS11105 (EG882_11105) - 2108943..2109755 (+) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29294.89 Da        Isoelectric Point: 8.7092

>NTDB_id=327472 EG882_RS11085 WP_015240232.1 2104190..2104957(+) (recO) [Bacillus velezensis strain 1B-23]
MLTKSEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPMSPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=327472 EG882_RS11085 WP_015240232.1 2104190..2104957(+) (recO) [Bacillus velezensis strain 1B-23]
ATGCTGACTAAAAGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATGTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

88.235

100

0.882

Multiple sequence alignment