Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   EG882_RS10005 Genome accession   NZ_CP033967
Coordinates   1914176..1914928 (+) Length   250 a.a.
NCBI ID   WP_012118107.1    Uniprot ID   A7Z796
Organism   Bacillus velezensis strain 1B-23     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1909176..1919928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG882_RS09990 (EG882_09990) - 1909399..1909590 (-) 192 WP_003152639.1 hypothetical protein -
  EG882_RS09995 (EG882_09995) - 1910043..1912685 (+) 2643 WP_124692798.1 valine--tRNA ligase -
  EG882_RS10000 (EG882_10000) - 1912744..1914036 (+) 1293 WP_046702259.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  EG882_RS10005 (EG882_10005) comC 1914176..1914928 (+) 753 WP_012118107.1 A24 family peptidase Machinery gene
  EG882_RS10010 (EG882_10010) - 1915055..1916056 (+) 1002 WP_069006955.1 SPOR domain-containing protein -
  EG882_RS10015 (EG882_10015) - 1916197..1916766 (+) 570 WP_007408164.1 Maf family protein -
  EG882_RS10020 (EG882_10020) radC 1916798..1917493 (+) 696 WP_007408165.1 DNA repair protein RadC -
  EG882_RS10025 (EG882_10025) mreB 1917585..1918598 (+) 1014 WP_003152647.1 cell shape-determining protein MreB -
  EG882_RS10030 (EG882_10030) mreC 1918629..1919492 (+) 864 WP_007408166.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27219.94 Da        Isoelectric Point: 9.4293

>NTDB_id=327465 EG882_RS10005 WP_012118107.1 1914176..1914928(+) (comC) [Bacillus velezensis strain 1B-23]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=327465 EG882_RS10005 WP_012118107.1 1914176..1914928(+) (comC) [Bacillus velezensis strain 1B-23]
GTGCTTTTAATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
TTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCTTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCAAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCGGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGAGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z796

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584

Multiple sequence alignment