Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FNW97_RS11575 Genome accession   NZ_CP041627
Coordinates   2240684..2242111 (+) Length   475 a.a.
NCBI ID   WP_074442997.1    Uniprot ID   -
Organism   Escherichia coli strain ETEC6     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2235684..2247111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNW97_RS11555 (FNW97_11555) yeeA 2236125..2237183 (-) 1059 WP_149796525.1 FUSC family protein -
  FNW97_RS11560 (FNW97_11560) sbmC 2237381..2237854 (-) 474 WP_001394439.1 DNA gyrase inhibitor SbmC -
  FNW97_RS11565 (FNW97_11565) dacD 2237973..2239136 (-) 1164 WP_032145576.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  FNW97_RS11570 (FNW97_11570) - 2239210..2240438 (+) 1229 WP_088895425.1 IS3-like element IS2 family transposase -
  FNW97_RS11575 (FNW97_11575) sbcB 2240684..2242111 (+) 1428 WP_074442997.1 exodeoxyribonuclease I Machinery gene
  FNW97_RS11580 (FNW97_11580) tsuB 2242154..2242381 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  FNW97_RS11585 (FNW97_11585) tsuA 2242395..2243453 (-) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  FNW97_RS11590 (FNW97_11590) plaP 2243632..2244990 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  FNW97_RS11595 (FNW97_11595) yoeI 2244980..2245042 (-) 63 WP_010723108.1 membrane protein YoeI -
  FNW97_RS11600 (FNW97_11600) yeeY 2245257..2246186 (-) 930 WP_000803360.1 LysR substrate-binding domain-containing protein -
  FNW97_RS11605 (FNW97_11605) yeeZ 2246232..2247056 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54514.84 Da        Isoelectric Point: 5.7523

>NTDB_id=327465 FNW97_RS11575 WP_074442997.1 2240684..2242111(+) (sbcB) [Escherichia coli strain ETEC6]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRKNPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=327465 FNW97_RS11575 WP_074442997.1 2240684..2242111(+) (sbcB) [Escherichia coli strain ETEC6]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTAAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583

Multiple sequence alignment