Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FNW97_RS02250 Genome accession   NZ_CP041627
Coordinates   474696..475301 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain ETEC6     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 469696..480301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNW97_RS02220 (FNW97_02220) rsmS 470401..470562 (-) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -
  FNW97_RS02225 (FNW97_02225) priC 470576..471103 (-) 528 WP_000844874.1 primosomal replication protein N'' -
  FNW97_RS02230 (FNW97_02230) ybaN 471173..471550 (+) 378 WP_047603640.1 DUF454 family protein -
  FNW97_RS02235 (FNW97_02235) apt 471703..472254 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  FNW97_RS02240 (FNW97_02240) dnaX 472383..474314 (+) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  FNW97_RS02245 (FNW97_02245) ybaB 474367..474696 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  FNW97_RS02250 (FNW97_02250) recR 474696..475301 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  FNW97_RS02255 (FNW97_02255) htpG 475411..477285 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  FNW97_RS02260 (FNW97_02260) adk 477466..478110 (+) 645 WP_001220233.1 adenylate kinase -
  FNW97_RS02270 (FNW97_02270) hemH 478346..479308 (+) 963 WP_001250088.1 ferrochelatase -
  FNW97_RS02275 (FNW97_02275) aes 479305..480264 (-) 960 WP_047603638.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=327445 FNW97_RS02250 WP_001195025.1 474696..475301(+) (recR) [Escherichia coli strain ETEC6]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=327445 FNW97_RS02250 WP_001195025.1 474696..475301(+) (recR) [Escherichia coli strain ETEC6]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443