Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EG882_RS03140 Genome accession   NZ_CP033967
Coordinates   589750..590040 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain 1B-23     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 584750..595040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG882_RS03125 (EG882_03125) - 584972..586297 (-) 1326 WP_023356663.1 G5 and 3D domain-containing protein -
  EG882_RS03130 (EG882_03130) - 586432..587199 (-) 768 WP_015239022.1 TatD family hydrolase -
  EG882_RS03135 (EG882_03135) metG 587275..589266 (-) 1992 WP_015239021.1 methionine--tRNA ligase -
  EG882_RS03140 (EG882_03140) abrB 589750..590040 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  EG882_RS03145 (EG882_03145) rsmI 590090..590971 (-) 882 WP_122503654.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  EG882_RS03150 (EG882_03150) - 590946..591245 (-) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  EG882_RS03155 (EG882_03155) - 591232..591975 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  EG882_RS03160 (EG882_03160) yabA 592036..592395 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  EG882_RS03165 (EG882_03165) ricT 592410..593237 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  EG882_RS03170 (EG882_03170) holB 593240..594229 (-) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  EG882_RS03175 (EG882_03175) - 594241..594681 (-) 441 WP_004264730.1 DUF327 family protein -
  EG882_RS03180 (EG882_03180) darA 594694..595023 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=327441 EG882_RS03140 WP_169510469.1 589750..590040(+) (abrB) [Bacillus velezensis strain 1B-23]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=327441 EG882_RS03140 WP_169510469.1 589750..590040(+) (abrB) [Bacillus velezensis strain 1B-23]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment