Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   HPB8_RS02595 Genome accession   NC_014256
Coordinates   517914..519122 (-) Length   402 a.a.
NCBI ID   WP_000814183.1    Uniprot ID   -
Organism   Helicobacter pylori B8     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 512914..524122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPB8_RS02570 (HPB8_539) - 512959..513477 (-) 519 WP_000760576.1 hypothetical protein -
  HPB8_RS02575 (HPB8_540) - 513474..514418 (-) 945 WP_000362464.1 CpaF/VirB11 family protein -
  HPB8_RS02580 (HPB8_541) - 514423..514698 (-) 276 WP_001278752.1 hypothetical protein -
  HPB8_RS02585 (HPB8_542) - 514715..515677 (-) 963 WP_001095495.1 hypothetical protein -
  HPB8_RS02590 (HPB8_543) - 515690..517930 (-) 2241 WP_000730437.1 collagen-like protein -
  HPB8_RS02595 (HPB8_544) comB10 517914..519122 (-) 1209 WP_000814183.1 DNA type IV secretion system protein ComB10 Machinery gene
  HPB8_RS02600 (HPB8_545) - 519119..520774 (-) 1656 WP_000617227.1 TrbG/VirB9 family P-type conjugative transfer protein -
  HPB8_RS02605 (HPB8_546) - 520771..521907 (-) 1137 WP_000067692.1 VirB8/TrbF family protein -
  HPB8_RS08910 - 521900..522040 (-) 141 WP_000789929.1 hypothetical protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 44988.57 Da        Isoelectric Point: 10.0507

>NTDB_id=32743 HPB8_RS02595 WP_000814183.1 517914..519122(-) (comB10) [Helicobacter pylori B8]
MKQSLLKKIGLGVGGFVVLMALGLLANKGSNNNNKEEIFQVSESKFPLSDYFFEEVKEEPKEKAKETPEVTTQEPTTQTS
PNPSVSANPNIKDYSHLNNNLNQQNNTITHLQQVLQSPSKIKPKPKHTKEQLEFLNTRLKPLEPTKPATKPDTEYGVDSF
TNLKYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRL
NIAWTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANRQNRKGDGNPFFGD
YLLMQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEILAEFFKEKKPPIKTKEEINNEE
EI

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=32743 HPB8_RS02595 WP_000814183.1 517914..519122(-) (comB10) [Helicobacter pylori B8]
ATGAAACAATCCTTGCTTAAAAAGATAGGCTTAGGTGTTGGGGGCTTTGTTGTTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGCTCAAACAATAACAATAAAGAAGAAATCTTTCAAGTAAGTGAGAGTAAATTCCCTTTAAGTGATTATTTCTTTG
AAGAAGTCAAAGAAGAGCCAAAAGAAAAAGCCAAAGAAACACCAGAAGTAACTACCCAAGAGCCTACAACACAAACTAGC
CCCAATCCTAGTGTTTCAGCTAATCCTAACATTAAAGATTATAGTCATCTTAACAACAATCTTAATCAGCAAAATAATAC
TATCACGCATTTACAACAAGTTTTACAAAGCCCCTCTAAAATAAAGCCTAAACCAAAGCATACTAAAGAGCAATTAGAAT
TTTTAAACACACGCCTTAAACCTTTAGAACCAACTAAACCAGCCACTAAGCCTGATACGGAATACGGCGTGGATAGTTTT
ACTAATTTAAAATATAAAGACATCGGCACTAATGAGCATAAGCTTTTAAGAACCATAACCGCTGATAGAATGATACCAGC
TTTTTTAATCACGCCTATTAGCTCTCAAATTGCTGGAAAAGTAACCGCCCAAGTAGAGAGCGATATATTTGCTTCTATGG
GTAGAGCGGTGCTAATCCCTAAAGGCTCTAAAGTTATAGGCTATTACAATAATAACAATCAAATTGGACAATACCGCCTT
AACATTGCTTGGACTAGAATTATCACGCCTCAAGGCATAAACATCATGCTCACTAACGCAAGGGGGGCTGATGTGAAGGG
TTATAATGGCTTAGTAGGCAAATACATTAGCCGAAACTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTCTCTA
ATGGTCTTTTAATAGGAATTACTTCAGCCTTAGCTAATAGGCAAAATAGAAAGGGTGATGGCAACCCTTTTTTTGGGGAT
TACTTGCTTATGCAACTCACTAGAAATACAGGCATGGGCATCAATCAAGTTATCAATCAAATGCTAAGGCAATATGGAGC
GCAAAACCCCATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGCCCTAATTTAGACATCTTTATCCCTAAACCAA
AAGATGGGGAGATTTTAGCGGAGTTCTTTAAAGAGAAAAAACCCCCAATCAAAACAAAAGAGGAAATTAACAATGAAGAA
GAAATCTAA

Domains

Predicted by InterProScan.

Bacterial conjugation TrbI-like protein (TrbI)

(178-368)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

52.43

97.264

0.51

Multiple sequence alignment