Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FNZ21_RS14335 Genome accession   NZ_CP041623
Coordinates   2999537..3000964 (-) Length   475 a.a.
NCBI ID   WP_000980540.1    Uniprot ID   A0A0H3JGG6
Organism   Escherichia coli O157:H7 strain ATCC 43888     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2994537..3005964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNZ21_RS14305 (FNZ21_14305) yeeZ 2994592..2995416 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  FNZ21_RS14310 (FNZ21_14310) yeeY 2995462..2996391 (+) 930 WP_000803334.1 LysR substrate-binding domain-containing protein -
  FNZ21_RS14315 (FNZ21_14315) yoeI 2996606..2996668 (+) 63 WP_010723108.1 membrane protein YoeI -
  FNZ21_RS14320 (FNZ21_14320) plaP 2996658..2998016 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  FNZ21_RS14325 (FNZ21_14325) tsuA 2998195..2999253 (+) 1059 WP_000492327.1 thiosulfate utilization transporter TsuA/YeeE -
  FNZ21_RS14330 (FNZ21_14330) tsuB 2999267..2999494 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  FNZ21_RS14335 (FNZ21_14335) sbcB 2999537..3000964 (-) 1428 WP_000980540.1 exodeoxyribonuclease I Machinery gene
  FNZ21_RS14340 (FNZ21_14340) dacD 3001173..3002339 (+) 1167 WP_001303036.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  FNZ21_RS14345 (FNZ21_14345) sbmC 3002458..3002931 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  FNZ21_RS14350 (FNZ21_14350) yeeA 3003130..3004188 (+) 1059 WP_001202488.1 FUSC family protein -
  FNZ21_RS14355 (FNZ21_14355) tmaR 3004360..3004689 (+) 330 WP_000450409.1 DUF496 family protein -
  FNZ21_RS28700 - 3004790..3005113 (-) 324 WP_269447326.1 EutP/PduV family microcompartment system protein -
  FNZ21_RS28260 - 3005092..3005172 (+) 81 WP_023441679.1 hypothetical protein -
  FNZ21_RS14370 (FNZ21_14370) - 3005461..3005541 (-) 81 Protein_2778 hypothetical protein -
  FNZ21_RS14375 (FNZ21_14375) yeeW 3005587..3005781 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54500.77 Da        Isoelectric Point: 5.3498

>NTDB_id=327414 FNZ21_RS14335 WP_000980540.1 2999537..3000964(-) (sbcB) [Escherichia coli O157:H7 strain ATCC 43888]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=327414 FNZ21_RS14335 WP_000980540.1 2999537..3000964(-) (sbcB) [Escherichia coli O157:H7 strain ATCC 43888]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGCTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAACCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
TATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTACATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3JGG6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581