Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EG819_RS17100 Genome accession   NZ_CP033946
Coordinates   3408196..3408792 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae subsp. pneumoniae strain ARLG-3135     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3403196..3413792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG819_RS17085 (EG819_17085) helD 3403404..3405458 (-) 2055 WP_014907883.1 DNA helicase IV -
  EG819_RS17090 (EG819_17090) - 3405583..3406029 (+) 447 WP_002898425.1 YccF domain-containing protein -
  EG819_RS17095 (EG819_17095) yccS 3406047..3408182 (+) 2136 WP_002898422.1 YccS family putative transporter -
  EG819_RS17100 (EG819_17100) sxy/tfoX 3408196..3408792 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  EG819_RS17110 (EG819_17110) sulA 3409141..3409650 (+) 510 WP_004893150.1 SOS-induced cell division inhibitor SulA -
  EG819_RS17115 (EG819_17115) ompA 3410003..3411073 (+) 1071 WP_002898408.1 porin OmpA -
  EG819_RS17120 (EG819_17120) matP 3411205..3411657 (-) 453 WP_064162266.1 macrodomain Ter protein MatP -
  EG819_RS17125 (EG819_17125) - 3411843..3413600 (+) 1758 WP_062920818.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=327359 EG819_RS17100 WP_004179217.1 3408196..3408792(-) (sxy/tfoX) [Klebsiella pneumoniae subsp. pneumoniae strain ARLG-3135]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=327359 EG819_RS17100 WP_004179217.1 3408196..3408792(-) (sxy/tfoX) [Klebsiella pneumoniae subsp. pneumoniae strain ARLG-3135]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment