Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EG339_RS01930 Genome accession   NZ_CP033932
Coordinates   422827..424176 (+) Length   449 a.a.
NCBI ID   WP_066695001.1    Uniprot ID   A0A3G6U265
Organism   Chryseobacterium bernardetii strain G0229     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 417827..429176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG339_RS01915 (EG339_01950) yidC 418192..419988 (-) 1797 WP_123868622.1 membrane protein insertase YidC -
  EG339_RS01920 (EG339_01955) - 420245..421855 (-) 1611 WP_123868623.1 CTP synthase -
  EG339_RS01925 (EG339_01960) - 422116..422685 (-) 570 WP_123868624.1 YceI family protein -
  EG339_RS01930 (EG339_01965) radA 422827..424176 (+) 1350 WP_066695001.1 DNA repair protein RadA Machinery gene
  EG339_RS01935 (EG339_01970) - 424250..424921 (+) 672 WP_123868625.1 class I SAM-dependent DNA methyltransferase -
  EG339_RS01940 (EG339_01975) - 424918..425625 (+) 708 WP_123868626.1 VanW family protein -
  EG339_RS01945 (EG339_01980) - 425622..426215 (+) 594 WP_123868627.1 ACP phosphodiesterase -
  EG339_RS01950 (EG339_01985) - 426212..426733 (-) 522 WP_123868628.1 DUF6702 family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49912.55 Da        Isoelectric Point: 6.6121

>NTDB_id=327285 EG339_RS01930 WP_066695001.1 422827..424176(+) (radA) [Chryseobacterium bernardetii strain G0229]
MAKLKTAYFCQNCGTQYSQWMGQCKNCGQWNTLVEEVVEKPNSKAVPFSKTKQHVINIIEVETSEEPRIKTPSEELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKIFYVSGEESASQIKMRADRLTDVQNPNCFLFTETSLEKILHEAKKL
EPDFMIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKENSIPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTSEIGIYEMISQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
STGFDSKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVIASVLSSNEDIAISEHYCFAGEIGLSGEIRPV
AQIEQRITEAEKLGYEKIFVSNLNKIPKRKFGIKIEEVSKIEDFHERLF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=327285 EG339_RS01930 WP_066695001.1 422827..424176(+) (radA) [Chryseobacterium bernardetii strain G0229]
ATGGCAAAACTGAAAACGGCATATTTCTGTCAAAACTGCGGAACCCAATACTCCCAATGGATGGGACAATGTAAAAACTG
TGGGCAATGGAATACCCTGGTGGAAGAAGTGGTGGAAAAACCCAATAGTAAAGCGGTACCTTTCTCAAAAACCAAACAAC
ATGTCATCAATATCATTGAGGTGGAGACGAGTGAAGAACCAAGGATAAAAACACCTTCTGAAGAGCTGAACCGTGTTCTT
GGTGGTGGAATTGTTTTAGGTTCTGTTACCCTGATTGGTGGTGAGCCCGGAATAGGAAAATCTACCCTTCTGCTTCAGCT
TGCCTTAAAAATGAAGAAAAAAATATTTTATGTTTCAGGGGAAGAAAGTGCTTCTCAGATCAAAATGAGGGCAGACAGAT
TAACGGATGTTCAAAATCCGAACTGTTTCCTCTTTACGGAAACTTCATTAGAAAAAATTCTTCACGAAGCCAAAAAACTG
GAACCGGATTTCATGATTATCGATTCTATCCAGACCCTTCAATCCCAATTAATAGAAAGTTCTCCCGGAACTGTTTCGCA
AATCAGGGAATGCTCCAACGAGATCATTAAATATGCCAAGGAAAACAGTATCCCTGTGTTTTTAGTAGGTCACATCACCA
AAGACGGGCAGATTGCCGGCCCAAAAGTATTGGAACACATGGTAGATGTAGTTTTAAACTTTGACGGAGACAGAAACCAC
CTTTTCAGATTATTGAGAGCGAACAAAAACCGTTTTGGATCTACTTCAGAAATTGGAATTTATGAAATGATTTCACAAGG
ATTAAAGGAGATCAAAAATCCTTCAGAAATTCTTATCACTAAAAAATTTGAAGAACTTTCCGGAAATTCTGTAGCGGTAA
CACTGGAGGGAAACAGACCAATGCTTCTGGAAATCCAGGCATTGGTAAGCACAGCCGTTTATGGTACTCCACAAAGAAGC
TCTACCGGTTTTGATTCCAAAAGACTGAATATGCTTCTTGCTGTTCTTGAAAAAAGAGCAGGTTTCCAGTTAGGAGCTAA
AGACGTTTTCCTTAATATTACAGGAGGCATAAAAACAGACGACCCGGCTTTGGATTTAGCCGTGATTGCCTCTGTTCTGT
CTTCTAATGAGGATATAGCCATTTCTGAACATTACTGTTTTGCAGGAGAGATTGGTTTAAGTGGAGAAATTCGTCCGGTT
GCCCAAATTGAACAGAGAATCACTGAAGCTGAAAAGCTGGGTTATGAAAAGATATTTGTTTCCAACCTCAATAAAATTCC
GAAAAGAAAGTTCGGAATCAAGATTGAAGAAGTTAGTAAAATTGAAGATTTCCACGAAAGACTTTTTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(65-216)

Subunit ChlI of Mg-chelatase (ChlI)

(338-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G6U265

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.115

100

0.494
  radA Streptococcus pneumoniae Rx1

48.246

100

0.49
  radA Streptococcus pneumoniae D39

48.246

100

0.49
  radA Streptococcus pneumoniae R6

48.246

100

0.49
  radA Streptococcus pneumoniae TIGR4

48.246

100

0.49
  radA Streptococcus mitis NCTC 12261

48.246

100

0.49
  radA Streptococcus mitis SK321

50.118

94.209

0.472

Multiple sequence alignment