Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | EG339_RS00600 | Genome accession | NZ_CP033932 |
| Coordinates | 121416..122069 (+) | Length | 217 a.a. |
| NCBI ID | WP_123868404.1 | Uniprot ID | A0A3G6T228 |
| Organism | Chryseobacterium bernardetii strain G0229 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 116416..127069
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EG339_RS00585 (EG339_00585) | aceA | 116821..118104 (-) | 1284 | WP_378113024.1 | isocitrate lyase | - |
| EG339_RS00590 (EG339_00590) | aceB | 118182..119756 (-) | 1575 | WP_123868402.1 | malate synthase A | - |
| EG339_RS00595 (EG339_00595) | - | 119883..121355 (+) | 1473 | WP_123868403.1 | helix-turn-helix domain-containing protein | - |
| EG339_RS00600 (EG339_00600) | comF | 121416..122069 (+) | 654 | WP_123868404.1 | ComF family protein | Machinery gene |
| EG339_RS00605 (EG339_00605) | - | 122189..122875 (+) | 687 | WP_123868405.1 | alpha/beta fold hydrolase | - |
| EG339_RS00610 (EG339_00610) | upp | 122878..123528 (-) | 651 | WP_123868406.1 | uracil phosphoribosyltransferase | - |
| EG339_RS00615 (EG339_00615) | der | 123678..124988 (-) | 1311 | WP_123868407.1 | ribosome biogenesis GTPase Der | - |
| EG339_RS00625 (EG339_00625) | - | 125674..126306 (+) | 633 | WP_123868408.1 | hypothetical protein | - |
| EG339_RS00630 (EG339_00630) | - | 126580..126795 (+) | 216 | WP_228459089.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 217 a.a. Molecular weight: 25548.50 Da Isoelectric Point: 8.0639
>NTDB_id=327282 EG339_RS00600 WP_123868404.1 121416..122069(+) (comF) [Chryseobacterium bernardetii strain G0229]
MILDLLFPNRCLHCNRIIETNLLVCDLCFRQIHFTHYDYSKNNPVKEQCKLFFPVENTYALFQFEEDSLSRKIIHELKYR
NREITGKILAEWTTERLDFKDQKPDLLVSVPLHPKKLRERGYNQLHLYTETLSEYYDIPFDNQLIKRNHYSKAQALKDKK
HRLETVNTFSVTQPITGKHILLIDDVFTTGTTVSSIAWEILNAGKNKVSVLVMAMDV
MILDLLFPNRCLHCNRIIETNLLVCDLCFRQIHFTHYDYSKNNPVKEQCKLFFPVENTYALFQFEEDSLSRKIIHELKYR
NREITGKILAEWTTERLDFKDQKPDLLVSVPLHPKKLRERGYNQLHLYTETLSEYYDIPFDNQLIKRNHYSKAQALKDKK
HRLETVNTFSVTQPITGKHILLIDDVFTTGTTVSSIAWEILNAGKNKVSVLVMAMDV
Nucleotide
Download Length: 654 bp
>NTDB_id=327282 EG339_RS00600 WP_123868404.1 121416..122069(+) (comF) [Chryseobacterium bernardetii strain G0229]
ATGATATTAGACTTACTCTTTCCCAACCGCTGCCTTCACTGCAACAGAATTATTGAGACTAATCTTCTGGTTTGTGACCT
TTGTTTTAGACAGATTCACTTTACGCACTATGATTATTCCAAAAACAATCCGGTTAAAGAACAATGCAAACTCTTTTTCC
CCGTTGAGAATACTTATGCCCTTTTTCAGTTTGAAGAGGACAGTTTAAGCAGGAAAATCATTCATGAACTGAAATACAGA
AATAGAGAAATTACCGGAAAAATACTTGCAGAATGGACTACTGAACGATTGGATTTTAAAGATCAGAAACCAGATCTTTT
GGTAAGTGTTCCGCTTCATCCTAAAAAATTAAGAGAAAGAGGTTATAACCAACTTCATTTATATACAGAAACTCTTTCAG
AATACTATGATATCCCATTTGACAATCAATTAATCAAGAGAAACCATTACTCCAAAGCCCAAGCCCTGAAGGATAAGAAG
CATAGGCTTGAAACGGTTAACACTTTTTCGGTCACCCAGCCAATCACAGGAAAACATATTCTTCTGATTGATGATGTTTT
TACAACAGGAACTACTGTTTCATCTATTGCCTGGGAGATTTTAAATGCTGGTAAGAATAAAGTGAGTGTACTGGTCATGG
CGATGGATGTATAG
ATGATATTAGACTTACTCTTTCCCAACCGCTGCCTTCACTGCAACAGAATTATTGAGACTAATCTTCTGGTTTGTGACCT
TTGTTTTAGACAGATTCACTTTACGCACTATGATTATTCCAAAAACAATCCGGTTAAAGAACAATGCAAACTCTTTTTCC
CCGTTGAGAATACTTATGCCCTTTTTCAGTTTGAAGAGGACAGTTTAAGCAGGAAAATCATTCATGAACTGAAATACAGA
AATAGAGAAATTACCGGAAAAATACTTGCAGAATGGACTACTGAACGATTGGATTTTAAAGATCAGAAACCAGATCTTTT
GGTAAGTGTTCCGCTTCATCCTAAAAAATTAAGAGAAAGAGGTTATAACCAACTTCATTTATATACAGAAACTCTTTCAG
AATACTATGATATCCCATTTGACAATCAATTAATCAAGAGAAACCATTACTCCAAAGCCCAAGCCCTGAAGGATAAGAAG
CATAGGCTTGAAACGGTTAACACTTTTTCGGTCACCCAGCCAATCACAGGAAAACATATTCTTCTGATTGATGATGTTTT
TACAACAGGAACTACTGTTTCATCTATTGCCTGGGAGATTTTAAATGCTGGTAAGAATAAAGTGAGTGTACTGGTCATGG
CGATGGATGTATAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
50.926 |
99.539 |
0.507 |