Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   FNV62_RS51655 Genome accession   NZ_CP041610
Coordinates   11447185..11447841 (+) Length   218 a.a.
NCBI ID   WP_143604798.1    Uniprot ID   -
Organism   Streptomyces sp. RLB3-17     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 11442185..11452841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNV62_RS51635 (FNV62_52395) - 11443287..11444108 (+) 822 WP_225900943.1 IS5 family transposase -
  FNV62_RS51640 (FNV62_52400) - 11444523..11445311 (-) 789 WP_143630296.1 ABC transporter permease -
  FNV62_RS51645 (FNV62_52405) - 11445311..11446045 (-) 735 WP_143630298.1 ABC transporter ATP-binding protein -
  FNV62_RS51650 (FNV62_52410) - 11446172..11447188 (+) 1017 WP_143630300.1 sensor histidine kinase -
  FNV62_RS51655 (FNV62_52415) vraR 11447185..11447841 (+) 657 WP_143604798.1 response regulator Regulator
  FNV62_RS58285 (FNV62_52425) - 11448455..11448613 (-) 159 Protein_10359 MFS transporter -
  FNV62_RS51660 (FNV62_52430) - 11448621..11449073 (-) 453 Protein_10360 ArsI/CadI family heavy metal resistance metalloenzyme -
  FNV62_RS51665 - 11449531..11449671 (-) 141 WP_164331904.1 hypothetical protein -
  FNV62_RS51670 (FNV62_52435) - 11449862..11450158 (-) 297 WP_143604799.1 hypothetical protein -
  FNV62_RS51675 (FNV62_52440) - 11451005..11451748 (+) 744 WP_097282009.1 SOS response-associated peptidase -
  FNV62_RS51680 (FNV62_52445) - 11451862..11452491 (-) 630 WP_097282008.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23494.30 Da        Isoelectric Point: 9.4762

>NTDB_id=327262 FNV62_RS51655 WP_143604798.1 11447185..11447841(+) (vraR) [Streptomyces sp. RLB3-17]
MTIRVLVADDQQLIRIGLAGIVDTAPDLKSIGSVATGRDAVAAAAEHRPDVVLMDVRMPEMDGIEATRRITAAGHARVLM
LTTFDLDEYVFGALRAGASGFLLKDAPHLDLLSAVRTVAQGEALLAPRITKRLIAAYVNRPAQPPRGQTPLRLPEAVTTR
EREVLLLVAEGLTNAEIAERLYIGAGTVKTHVARLLTKLDARDRVQLVIHAYRSGLTG

Nucleotide


Download         Length: 657 bp        

>NTDB_id=327262 FNV62_RS51655 WP_143604798.1 11447185..11447841(+) (vraR) [Streptomyces sp. RLB3-17]
GTGACCATCCGGGTCCTGGTCGCCGACGACCAGCAGCTGATCCGCATCGGCCTGGCCGGAATCGTGGACACCGCCCCGGA
CCTCAAGTCGATCGGCAGCGTCGCAACGGGCCGGGACGCCGTCGCAGCCGCCGCCGAACACCGGCCCGACGTCGTCCTGA
TGGACGTGCGGATGCCCGAGATGGACGGCATCGAAGCCACCCGCCGTATCACCGCCGCCGGCCACGCTCGTGTCCTGATG
CTCACCACCTTCGACCTGGACGAGTACGTCTTCGGCGCACTGCGTGCCGGGGCCAGCGGCTTCCTCCTGAAGGACGCTCC
GCACCTCGACCTGTTGTCCGCCGTCCGCACCGTCGCCCAGGGCGAGGCGCTGCTCGCGCCGCGCATCACCAAACGGCTCA
TCGCGGCGTACGTCAACAGGCCGGCACAGCCACCGCGCGGTCAGACACCGCTGCGGCTGCCCGAGGCCGTCACCACCCGT
GAACGCGAAGTGCTCCTGCTCGTCGCCGAAGGACTCACCAACGCCGAGATCGCCGAACGGCTGTACATCGGCGCGGGCAC
GGTGAAGACCCATGTCGCCCGGCTGCTGACCAAACTCGATGCCCGCGACCGCGTCCAACTCGTCATCCACGCCTACCGCA
GCGGCCTCACTGGCTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-115)

Bacterial regulatory proteins, luxR family (GerE)

(158-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.092

99.541

0.399