Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   FNV62_RS36990 Genome accession   NZ_CP041610
Coordinates   8205855..8206631 (-) Length   258 a.a.
NCBI ID   WP_054229877.1    Uniprot ID   A0A250VHF9
Organism   Streptomyces sp. RLB3-17     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8200855..8211631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNV62_RS36980 (FNV62_37530) - 8201046..8203115 (+) 2070 WP_225900490.1 IucA/IucC family protein -
  FNV62_RS36985 (FNV62_37535) - 8203210..8205213 (+) 2004 WP_143628386.1 ATP-dependent DNA helicase -
  FNV62_RS36990 (FNV62_37540) dinR/lexA 8205855..8206631 (-) 777 WP_054229877.1 transcriptional repressor LexA Regulator
  FNV62_RS36995 (FNV62_37545) nrdR 8207149..8207733 (+) 585 WP_143628387.1 transcriptional regulator NrdR -
  FNV62_RS37000 (FNV62_37550) - 8207885..8210791 (+) 2907 WP_054229879.1 vitamin B12-dependent ribonucleotide reductase -
  FNV62_RS37005 (FNV62_37555) - 8210905..8211438 (-) 534 WP_143603130.1 TerD family protein -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 27935.63 Da        Isoelectric Point: 7.4755

>NTDB_id=327243 FNV62_RS36990 WP_054229877.1 8205855..8206631(-) (dinR/lexA) [Streptomyces sp. RLB3-17]
MTTTADSATITAQDRSQGRLEPVHAMNEATNHEGPKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQSSAQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDV
FPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNAAYQPI
PGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 777 bp        

>NTDB_id=327243 FNV62_RS36990 WP_054229877.1 8205855..8206631(-) (dinR/lexA) [Streptomyces sp. RLB3-17]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCACGAATCATGAGGGGCCCAAGCGCTCCCTGCCAGGGCGACCTCCAGGCATCCGCGCCGACAGCTCGGGACTCA
CCGACAGGCAGCGCCGGGTGATCGAGGTCATCCGGGACTCCGTGCAGCGGCGCGGCTACCCGCCGTCGATGCGGGAGATC
GGACAGGCGGTCGGCCTCTCCAGCACCTCGTCGGTCGCCCACCAGCTGATGGCACTGGAGCGCAAGGGCTTCCTGCGCCG
CGATCCGCACCGTCCGCGGGCGTACGAGGTCCGGGGCTCCGACCAGTCCTCGGCACAGCCCACGGACACGGCGGGCAAGC
CGGCCGCGTCGTACGTGCCGCTCGTCGGCCGTATCGCCGCCGGTGGCCCGATCCTGGCCGAGGAGTCGGTGGAGGACGTC
TTCCCCCTCCCCCGGCAGCTGGTCGGTGACGGCGAGCTGTTCGTCCTGAAGGTCGTCGGCGACTCGATGATCGAGGCCGC
CATCTGCGACGGGGACTGGGTGACGGTCCGGCGCCAGCCGGTCGCGGAGAACGGTGACATCGTGGCCGCGATGCTGGACG
GCGAGGCCACGGTGAAGCGGTTCAAGCGTGAGGACGGCCATGTGTGGCTCCTCCCGCACAACGCCGCGTACCAGCCGATT
CCCGGCGACGAGGCGACCATCCTGGGCAAGGTGGTGGCGGTGCTGCGGCGCGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(140-252)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A250VHF9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.714

81.395

0.372