Detailed information NTG0327242

Bioinformatically predicted

Overview

• Name: comF
• Type: Machinery gene
• Locus tag: EG358_RS17500
• Genome accession: NZ_CP033929
• Coordinates: 3787077..3787547 (+)
• Length: 156 a.a.
• NCBI ID: WP_317043428.1
• Uniprot ID: -
• Organism: Chryseobacterium indoltheticum strain ATCC 27950
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3782077..3792547

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EG358_RS17490 (EG358_17595)	aceB	3783447..3785021 (-)	1575	WP_076561020.1	malate synthase A	-
EG358_RS17495 (EG358_17600)	-	3785148..3786668 (+)	1521	WP_076561019.1	helix-turn-helix domain-containing protein	-
EG358_RS19975	-	3786894..3786950 (+)	57	Protein_3476	hypothetical protein	-
EG358_RS17500 (EG358_17605)	comF	3787077..3787547 (+)	471	WP_317043428.1	phosphoribosyltransferase family protein	Machinery gene
EG358_RS17505 (EG358_17610)	upp	3787628..3788278 (-)	651	WP_076561017.1	uracil phosphoribosyltransferase	-
EG358_RS17510 (EG358_17615)	der	3788357..3789667 (-)	1311	WP_076561016.1	ribosome biogenesis GTPase Der	-
EG358_RS17515 (EG358_17620)	katG	3789926..3792205 (-)	2280	WP_076561015.1	catalase/peroxidase HPI	-

Sequence

Protein

• Length: 156 a.a.
• Molecular weight: 18302.19 Da
• Isoelectric Point: 10.2711

>NTDB_id=327242 EG358_RS17500 WP_317043428.1 3787077..3787547(+) (comF) [Chryseobacterium indoltheticum strain ATCC 27950]
MKFEKENLSRKIIHELKYKSREKAGKILAEWTTERLDFKKEKPDVLVSVPLHPKKLKERGYNQLHLFTETLSRFYGIPFS
HNLIKRNHYSKAQALKDKQHRLETQNTFSITENITDKHILLIDDVFTTGNTLASIAWEILKARNNKVSVLVIAMDE

Nucleotide

• Length: 471 bp

>NTDB_id=327242 EG358_RS17500 WP_317043428.1 3787077..3787547(+) (comF) [Chryseobacterium indoltheticum strain ATCC 27950]
ATGAAGTTTGAAAAGGAAAATTTAAGTAGAAAAATCATTCATGAATTAAAATATAAAAGCCGTGAAAAAGCCGGAAAGAT
TTTAGCAGAATGGACGACGGAGCGTTTAGATTTCAAAAAAGAAAAACCTGATGTGTTGGTTTCTGTTCCATTGCATCCGA
AGAAGCTGAAGGAAAGAGGTTATAATCAACTGCATTTGTTTACGGAAACATTATCGAGGTTTTATGGGATTCCTTTTAGT
CATAATTTAATTAAAAGAAATCACTATTCAAAAGCTCAGGCATTGAAAGACAAGCAACATCGTCTGGAAACTCAGAATAC
TTTTTCAATTACTGAAAACATTACAGATAAACATATTTTATTGATAGATGATGTTTTCACCACAGGAAATACACTGGCTT
CAATTGCCTGGGAAATCCTGAAAGCACGAAATAACAAAGTAAGTGTTTTGGTAATAGCAATGGACGAATAA

Domains

Predicted by InterproScan.

• Phosphoribosyl transferase domain (Pribosyltran) (84-146)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comF	Riemerella anatipestifer ATCC 11845 = DSM 15868	59.615	100	0.596