Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EG358_RS04980 Genome accession   NZ_CP033929
Coordinates   1068896..1070248 (-) Length   450 a.a.
NCBI ID   WP_076557997.1    Uniprot ID   A0A381FJ87
Organism   Chryseobacterium indoltheticum strain ATCC 27950     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1063896..1075248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG358_RS04965 (EG358_04985) - 1064426..1067659 (+) 3234 WP_076557992.1 S8 family peptidase -
  EG358_RS04970 (EG358_04990) - 1067741..1068262 (+) 522 WP_076557993.1 DUF6702 family protein -
  EG358_RS04975 (EG358_04995) - 1068269..1068862 (-) 594 WP_076557995.1 ACP phosphodiesterase -
  EG358_RS04980 (EG358_05000) radA 1068896..1070248 (-) 1353 WP_076557997.1 DNA repair protein RadA Machinery gene
  EG358_RS04985 (EG358_05010) - 1070758..1071324 (+) 567 WP_076558000.1 YceI family protein -
  EG358_RS04990 (EG358_05015) - 1071531..1073138 (+) 1608 WP_076558002.1 CTP synthase -
  EG358_RS04995 (EG358_05020) - 1073186..1074196 (-) 1011 WP_076558003.1 hypothetical protein -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 49895.54 Da        Isoelectric Point: 6.5078

>NTDB_id=327234 EG358_RS04980 WP_076557997.1 1068896..1070248(-) (radA) [Chryseobacterium indoltheticum strain ATCC 27950]
MAKLKTAYFCQNCGSQYPQWTGQCKNCLEWNTLVEEIVEKTSSKTPPFSKSKQNVINIIEVEAVEEPRIKTPSDELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKIFYVSGEESASQIKMRADRLADVKNPNCFLYTETSLEKILHEAKKL
EPDFVIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKENNVPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTAEIGIYEMVSQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
CTGFDSKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVVASILSSNEDIAISEHFCFAGEIGLSGEIRPI
AQVEQRITEAEKLGYEKIFVSNLNKIPKRKFGIKIEEVSKVEDFHERLFS

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=327234 EG358_RS04980 WP_076557997.1 1068896..1070248(-) (radA) [Chryseobacterium indoltheticum strain ATCC 27950]
ATGGCAAAACTCAAAACTGCATACTTCTGTCAAAACTGCGGATCGCAATACCCTCAATGGACCGGGCAATGTAAAAATTG
TCTCGAATGGAACACTTTGGTAGAAGAAATCGTAGAAAAAACATCTTCAAAAACACCTCCTTTTTCAAAATCGAAGCAAA
ACGTAATCAACATCATTGAAGTTGAAGCCGTTGAAGAGCCGAGAATAAAAACTCCTTCCGATGAGCTAAACCGTGTCTTG
GGAGGCGGAATTGTTTTAGGATCTGTTACCTTAATCGGTGGTGAGCCCGGAATTGGTAAGTCTACTCTGCTTTTGCAGCT
TGCGTTGAAAATGAAGAAGAAAATCTTCTATGTTTCAGGAGAAGAAAGTGCTTCTCAGATTAAAATGAGAGCCGACCGTT
TAGCAGATGTGAAAAATCCTAATTGTTTTTTATATACCGAAACTTCTTTAGAAAAAATCCTTCATGAAGCTAAAAAACTG
GAACCGGATTTCGTTATCATCGATTCTATTCAAACATTACAATCACAGTTGATCGAAAGTTCGCCCGGAACAGTTTCCCA
GATTCGGGAATGCTCGAATGAAATTATTAAATATGCCAAAGAAAACAATGTCCCTGTTTTTCTGGTTGGGCACATTACAA
AAGACGGTCAAATTGCCGGACCAAAGGTTTTGGAGCACATGGTCGATGTTGTTCTGAATTTCGATGGTGATAGAAACCAT
CTTTTCAGACTCTTGAGAGCCAATAAAAACCGTTTCGGATCAACTGCAGAGATCGGAATTTACGAAATGGTTTCGCAAGG
ATTAAAAGAAATAAAAAACCCTTCTGAAATTTTAATTACTAAAAAGTTTGAAGAGCTTTCGGGCAATTCTGTAGCAGTAA
CGTTAGAAGGAAACCGACCGATGCTGTTGGAAATTCAGGCTTTGGTAAGTACCGCTGTCTACGGAACGCCGCAGAGAAGT
TGTACCGGTTTTGATTCTAAAAGGCTCAATATGTTGTTAGCTGTTCTTGAAAAAAGAGCAGGTTTTCAATTGGGTGCAAA
AGATGTCTTTTTAAATATTACAGGCGGAATAAAAACCGACGATCCTGCTTTAGATTTAGCGGTTGTCGCATCTATTCTGT
CATCAAATGAAGATATTGCTATTTCTGAACATTTTTGTTTTGCTGGTGAAATTGGTTTGAGTGGAGAAATTCGTCCAATT
GCGCAGGTCGAACAAAGAATTACGGAGGCTGAAAAATTGGGTTATGAGAAAATTTTCGTTTCTAATTTAAATAAAATTCC
AAAGAGAAAATTCGGAATTAAGATTGAAGAAGTAAGTAAAGTTGAGGATTTTCATGAACGATTATTTTCATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(338-423)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(61-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A381FJ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.673

100

0.489
  radA Streptococcus pneumoniae Rx1

47.097

100

0.487
  radA Streptococcus pneumoniae D39

47.097

100

0.487
  radA Streptococcus pneumoniae R6

47.097

100

0.487
  radA Streptococcus pneumoniae TIGR4

47.097

100

0.487
  radA Streptococcus mitis NCTC 12261

47.097

100

0.487
  radA Streptococcus mitis SK321

49.188

95.778

0.471

Multiple sequence alignment