Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EG340_RS09020 Genome accession   NZ_CP033928
Coordinates   1942156..1943508 (+) Length   450 a.a.
NCBI ID   WP_076557997.1    Uniprot ID   A0A381FJ87
Organism   Chryseobacterium indoltheticum strain G0211     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1937156..1948508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG340_RS09005 (EG340_09080) yidC 1937265..1939088 (-) 1824 WP_115622087.1 membrane protein insertase YidC -
  EG340_RS09010 (EG340_09085) - 1939267..1940874 (-) 1608 WP_115620209.1 CTP synthase -
  EG340_RS09015 (EG340_09090) - 1941081..1941647 (-) 567 WP_123886007.1 YceI family protein -
  EG340_RS09020 (EG340_09100) radA 1942156..1943508 (+) 1353 WP_076557997.1 DNA repair protein RadA Machinery gene
  EG340_RS09025 (EG340_09105) - 1943542..1944135 (+) 594 WP_123886008.1 ACP phosphodiesterase -
  EG340_RS09030 (EG340_09110) - 1944142..1944663 (-) 522 WP_123886009.1 DUF6702 family protein -
  EG340_RS09035 (EG340_09115) - 1944745..1947756 (-) 3012 WP_123886010.1 S8 family peptidase -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 49895.54 Da        Isoelectric Point: 6.5078

>NTDB_id=327218 EG340_RS09020 WP_076557997.1 1942156..1943508(+) (radA) [Chryseobacterium indoltheticum strain G0211]
MAKLKTAYFCQNCGSQYPQWTGQCKNCLEWNTLVEEIVEKTSSKTPPFSKSKQNVINIIEVEAVEEPRIKTPSDELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKIFYVSGEESASQIKMRADRLADVKNPNCFLYTETSLEKILHEAKKL
EPDFVIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKENNVPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTAEIGIYEMVSQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
CTGFDSKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVVASILSSNEDIAISEHFCFAGEIGLSGEIRPI
AQVEQRITEAEKLGYEKIFVSNLNKIPKRKFGIKIEEVSKVEDFHERLFS

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=327218 EG340_RS09020 WP_076557997.1 1942156..1943508(+) (radA) [Chryseobacterium indoltheticum strain G0211]
ATGGCAAAACTCAAAACTGCATACTTCTGTCAAAACTGCGGATCGCAATACCCACAATGGACCGGGCAATGTAAAAATTG
TCTCGAATGGAACACTTTGGTAGAAGAAATTGTTGAAAAAACGTCTTCAAAAACACCTCCTTTTTCAAAATCAAAGCAAA
ACGTAATCAACATCATTGAAGTTGAAGCCGTTGAAGAGCCGAGAATAAAAACTCCTTCCGATGAGCTGAACCGTGTCTTG
GGAGGCGGAATTGTCTTAGGATCTGTTACCTTAATCGGTGGGGAACCCGGAATTGGTAAGTCTACTCTGCTTTTGCAACT
TGCTTTGAAAATGAAGAAGAAAATCTTCTATGTTTCAGGAGAAGAAAGTGCTTCGCAGATCAAAATGAGAGCCGATCGTT
TGGCAGATGTAAAAAATCCGAACTGTTTTCTGTATACCGAAACGTCTTTAGAAAAAATCCTTCACGAAGCTAAAAAACTG
GAACCGGATTTCGTTATTATCGATTCTATTCAAACATTACAATCACAGTTGATCGAAAGTTCGCCCGGAACTGTTTCCCA
AATCAGAGAATGTTCAAATGAAATTATTAAATATGCCAAAGAAAACAACGTTCCCGTATTTTTGGTAGGGCACATCACAA
AAGATGGACAAATTGCAGGACCGAAAGTTTTGGAACACATGGTCGATGTTGTTCTGAATTTCGATGGTGATAGAAACCAT
CTTTTCAGACTTTTGAGAGCCAATAAAAACCGTTTCGGATCAACTGCAGAGATCGGAATTTACGAAATGGTTTCGCAAGG
ATTAAAAGAAATTAAAAACCCTTCTGAAATTTTAATTACTAAAAAGTTTGAAGAGCTTTCAGGAAATTCTGTAGCAGTAA
CTTTAGAAGGAAACCGACCGATGCTGTTGGAAATTCAGGCTTTGGTAAGTACCGCTGTCTACGGAACGCCGCAGAGAAGT
TGTACCGGTTTTGATTCTAAAAGACTTAATATGTTGTTAGCTGTTCTTGAAAAAAGAGCAGGTTTTCAATTGGGTGCAAA
AGATGTCTTTTTAAATATTACAGGCGGAATAAAAACCGACGATCCGGCTTTAGATTTAGCGGTTGTCGCATCTATTCTGT
CATCAAATGAAGATATTGCTATTTCTGAACATTTCTGTTTTGCTGGTGAAATTGGTTTGAGTGGAGAAATTCGTCCGATT
GCGCAGGTCGAACAAAGAATTACGGAAGCTGAAAAATTGGGTTATGAGAAAATTTTTGTTTCTAATTTAAATAAAATTCC
AAAGAGAAAATTCGGAATTAAGATTGAAGAAGTAAGTAAAGTTGAGGATTTTCATGAGCGATTATTTTCATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(338-423)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(61-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A381FJ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.673

100

0.489
  radA Streptococcus pneumoniae Rx1

47.097

100

0.487
  radA Streptococcus pneumoniae D39

47.097

100

0.487
  radA Streptococcus pneumoniae R6

47.097

100

0.487
  radA Streptococcus pneumoniae TIGR4

47.097

100

0.487
  radA Streptococcus mitis NCTC 12261

47.097

100

0.487
  radA Streptococcus mitis SK321

49.188

95.778

0.471

Multiple sequence alignment