Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   FNV62_RS23230 Genome accession   NZ_CP041610
Coordinates   5120963..5121964 (-) Length   333 a.a.
NCBI ID   WP_054233096.1    Uniprot ID   A0ABU3URY2
Organism   Streptomyces sp. RLB3-17     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5115963..5126964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNV62_RS55775 (FNV62_23560) - 5116045..5116947 (+) 903 WP_144315622.1 tetratricopeptide repeat protein -
  FNV62_RS23215 (FNV62_23565) - 5117050..5118624 (-) 1575 WP_179858199.1 MFS transporter -
  FNV62_RS23220 (FNV62_23570) - 5118686..5119741 (+) 1056 WP_144315623.1 helix-turn-helix transcriptional regulator -
  FNV62_RS23225 (FNV62_23575) - 5119819..5120421 (-) 603 WP_413083921.1 TetR family transcriptional regulator -
  FNV62_RS23230 (FNV62_23580) rpoS 5120963..5121964 (-) 1002 WP_054233096.1 RNA polymerase sigma factor RpoD/SigA Regulator
  FNV62_RS23235 (FNV62_23585) - 5122134..5122682 (+) 549 WP_097285101.1 GNAT family N-acetyltransferase -
  FNV62_RS23240 (FNV62_23590) - 5122695..5123507 (-) 813 WP_144315624.1 dioxygenase -
  FNV62_RS23245 (FNV62_23595) - 5123636..5124145 (+) 510 WP_054233158.1 MarR family winged helix-turn-helix transcriptional regulator -
  FNV62_RS23250 (FNV62_23600) - 5124375..5125925 (-) 1551 WP_054233099.1 MFS transporter -
  FNV62_RS23255 (FNV62_23605) - 5126130..5126774 (-) 645 WP_054233100.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 37387.14 Da        Isoelectric Point: 4.9035

>NTDB_id=327206 FNV62_RS23230 WP_054233096.1 5120963..5121964(-) (rpoS) [Streptomyces sp. RLB3-17]
MATRAVARRQSATGETTDAARSVRAVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVFARQILDDEVDAPKA
DATREELEALVAEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQA
ITRSIADQSRTIRLPVHLVEELGRIRRVQREFNRKNGREPEHAEIAAELDSTPERVTDVLDWARDPVSLNMSVDDDGDTQ
FGDLLEDTSAVSPEQSVLTLLRSEELDDLIGRLDQRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLEL
KKLARDTGFDAAA

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=327206 FNV62_RS23230 WP_054233096.1 5120963..5121964(-) (rpoS) [Streptomyces sp. RLB3-17]
ATGGCAACCCGTGCCGTCGCCCGTCGTCAGTCCGCCACCGGCGAGACCACCGACGCGGCACGCAGTGTTCGCGCCGTAGG
CGGCGAAATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGTACGCCGCTGCTCGACGCCGCCAAGG
AAGTCGAGCTGTCCCAGATCATCGAGGCGGGTGTGTTCGCTCGGCAGATCCTCGACGACGAGGTCGATGCCCCCAAGGCG
GACGCGACCCGCGAGGAGCTCGAGGCGCTGGTCGCCGAGGGGGAGCGGGCCAAGGACGTCTTCATCCGCTCCAACCTGAG
GCTGGTCGTCGCCGTGGCCCGGCGGTATCCCCGTAGCGGCCTGCCCCTGCTCGACCTGATCCAGGAGGGCAACGCGGGCC
TGGTGCGCGCGGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACGTGGTGGATCCGTCAGGCC
ATCACCCGCTCCATCGCCGACCAGTCGCGCACGATCCGCCTCCCCGTGCACCTGGTCGAGGAGCTGGGCCGGATCCGTCG
CGTGCAGCGCGAGTTCAACCGCAAGAACGGGCGCGAGCCCGAGCACGCGGAGATCGCCGCCGAGCTGGACTCGACCCCGG
AGCGTGTGACGGACGTCCTGGACTGGGCCCGCGACCCGGTCTCGCTGAACATGTCGGTGGACGACGACGGTGACACCCAG
TTCGGTGACCTCCTCGAGGACACCTCCGCGGTCTCGCCCGAGCAGTCCGTCCTCACCCTGCTGCGCAGCGAGGAGCTCGA
CGACCTGATCGGCCGCCTCGACCAGCGCACGGCCTCGATCATCAAGATGAGGTACGGCATCGACGACGGCCGGGAGCGCA
CGCTCACGGAGGTCGGCAAGGAGCACGGGCTCACCCGTGAGCGGATCCGCCAGATCGAGAAGCACGCGCTGCTGGAGCTG
AAGAAGCTGGCCCGCGACACCGGTTTTGACGCGGCGGCTTAA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(270-322)

Sigma-70 region 3 (Sigma70_r3)

(180-256)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)

Sigma-70 region 2 (Sigma70_r2)

(101-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.333

90.09

0.363