Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EG359_RS11375 Genome accession   NZ_CP033926
Coordinates   2497058..2498407 (+) Length   449 a.a.
NCBI ID   WP_076354786.1    Uniprot ID   A0A1N7IH34
Organism   Chryseobacterium joostei strain DSM 16927     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2492058..2503407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG359_RS11355 (EG359_11485) - 2492528..2493283 (+) 756 WP_076354778.1 SDR family oxidoreductase -
  EG359_RS11360 (EG359_11490) - 2493196..2494566 (+) 1371 WP_123867370.1 phosphatase PAP2 family protein -
  EG359_RS11365 (EG359_11495) - 2494570..2496270 (+) 1701 WP_076354782.1 bifunctional alpha/beta hydrolase/class I SAM-dependent methyltransferase -
  EG359_RS11370 (EG359_11500) - 2496358..2496924 (-) 567 WP_076354784.1 YceI family protein -
  EG359_RS11375 (EG359_11505) radA 2497058..2498407 (+) 1350 WP_076354786.1 DNA repair protein RadA Machinery gene
  EG359_RS11380 (EG359_11510) - 2498513..2499184 (+) 672 WP_076354788.1 class I SAM-dependent methyltransferase -
  EG359_RS11385 (EG359_11515) - 2499181..2499888 (+) 708 WP_076354790.1 VanW family protein -
  EG359_RS11390 (EG359_11520) - 2499885..2500478 (+) 594 WP_076354792.1 ACP phosphodiesterase -
  EG359_RS11395 (EG359_11525) - 2500475..2500990 (-) 516 WP_076354794.1 DUF6702 family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49899.50 Da        Isoelectric Point: 6.5083

>NTDB_id=327203 EG359_RS11375 WP_076354786.1 2497058..2498407(+) (radA) [Chryseobacterium joostei strain DSM 16927]
MAKLKTAYFCQNCGTQYSQWMGQCKNCGEWNTLVEEVVEKTSHKAVPFSKTKQHVINIIEVETSEEPRIKTPSEELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKVFYVSGEESASQIKMRADRLTDIQNPNCFLFTETSLEKILHEAKKL
EPDFMIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKENSIPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTSEIGIYEMISQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
STGFDSKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVIASVLSSSEDIAISEHYCFAGEIGLSGEIRPV
AQVEQRITEAEKLGYEKIFVSNLNKIPKRKFGIKIEEVSKIEDFHERLF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=327203 EG359_RS11375 WP_076354786.1 2497058..2498407(+) (radA) [Chryseobacterium joostei strain DSM 16927]
ATGGCAAAACTGAAAACGGCATATTTCTGTCAAAACTGCGGAACACAATATTCTCAATGGATGGGACAATGCAAAAATTG
TGGAGAATGGAACACCTTGGTGGAAGAAGTTGTAGAAAAGACCTCTCATAAGGCTGTACCATTCTCAAAAACCAAGCAGC
ATGTCATCAATATCATCGAGGTAGAAACCAGTGAGGAACCGAGAATAAAAACTCCATCTGAAGAGCTGAACCGTGTTCTA
GGAGGCGGAATTGTATTAGGTTCTGTTACCTTAATCGGTGGTGAACCCGGAATCGGAAAATCTACTCTTCTGTTGCAGCT
TGCCTTAAAAATGAAGAAGAAAGTCTTCTATGTTTCAGGGGAAGAAAGCGCTTCTCAGATTAAAATGAGAGCGGATAGAC
TAACGGATATTCAAAACCCAAACTGTTTTCTTTTCACAGAAACTTCACTTGAAAAAATTCTTCACGAAGCCAAAAAACTG
GAACCGGATTTTATGATCATCGATTCCATCCAGACGCTTCAGTCACAACTTATAGAAAGTTCTCCGGGAACTGTATCTCA
AATTAGAGAGTGTTCCAATGAAATTATTAAATATGCTAAGGAGAACAGTATTCCTGTATTTCTGGTAGGTCACATTACCA
AAGACGGTCAAATTGCGGGACCAAAAGTACTGGAACACATGGTGGATGTGGTTTTGAACTTTGACGGAGACCGAAATCAC
CTTTTTAGATTACTGAGAGCCAATAAAAACCGTTTTGGATCCACTTCTGAAATCGGAATCTACGAAATGATTTCCCAAGG
ATTAAAGGAAATTAAAAATCCATCTGAAATTCTTATCACAAAGAAGTTTGAGGAACTTTCGGGAAATTCAGTGGCAGTAA
CTCTGGAAGGAAACAGACCTATGCTTTTGGAAATACAGGCGCTGGTAAGTACTGCTGTTTATGGTACCCCACAAAGGAGT
TCTACCGGATTTGACTCAAAAAGGCTGAATATGCTGTTGGCTGTACTGGAAAAAAGAGCAGGTTTTCAACTGGGAGCAAA
GGATGTCTTCCTTAATATTACGGGAGGGATAAAAACTGATGATCCAGCTTTGGATTTAGCGGTCATTGCATCTGTTCTTT
CGTCTAGTGAAGACATTGCCATTTCTGAACATTACTGTTTTGCAGGAGAGATTGGATTAAGCGGAGAAATTCGTCCGGTT
GCCCAAGTTGAACAGAGAATTACCGAAGCTGAAAAATTAGGGTATGAAAAGATATTCGTTTCTAATCTTAATAAAATTCC
GAAAAGAAAATTTGGGATTAAGATTGAGGAAGTAAGTAAAATTGAAGATTTCCATGAAAGACTTTTTTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(65-216)

Subunit ChlI of Mg-chelatase (ChlI)

(338-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1N7IH34

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.115

100

0.494
  radA Streptococcus pneumoniae Rx1

48.465

100

0.492
  radA Streptococcus pneumoniae D39

48.465

100

0.492
  radA Streptococcus pneumoniae R6

48.465

100

0.492
  radA Streptococcus pneumoniae TIGR4

48.465

100

0.492
  radA Streptococcus mitis NCTC 12261

48.465

100

0.492
  radA Streptococcus mitis SK321

50.355

94.209

0.474

Multiple sequence alignment