Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   FNV62_RS07830 Genome accession   NZ_CP041610
Coordinates   1627933..1628157 (-) Length   74 a.a.
NCBI ID   WP_144314924.1    Uniprot ID   -
Organism   Streptomyces sp. RLB3-17     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1622933..1633157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNV62_RS07805 (FNV62_07950) - 1623176..1624378 (-) 1203 WP_263986824.1 PP2C family protein-serine/threonine phosphatase -
  FNV62_RS07810 (FNV62_07955) - 1624894..1625535 (+) 642 WP_143600456.1 carbonic anhydrase -
  FNV62_RS07815 - 1625825..1626289 (-) 465 WP_164657570.1 hypothetical protein -
  FNV62_RS07820 (FNV62_07960) - 1626654..1626929 (+) 276 WP_144314921.1 hypothetical protein -
  FNV62_RS07825 (FNV62_07965) - 1627724..1627936 (-) 213 WP_144314922.1 hypothetical protein -
  FNV62_RS07830 (FNV62_07970) dinR/lexA 1627933..1628157 (-) 225 WP_144314924.1 LexA family protein Regulator
  FNV62_RS07835 (FNV62_07975) - 1628836..1629345 (+) 510 WP_143599462.1 hypothetical protein -
  FNV62_RS07840 (FNV62_07985) - 1630361..1631599 (-) 1239 WP_375336837.1 IS701 family transposase -
  FNV62_RS55560 (FNV62_07990) - 1632590..1632688 (+) 99 Protein_1614 cation transporter -

Sequence

Protein


Download         Length: 74 a.a.        Molecular weight: 8605.80 Da        Isoelectric Point: 9.0644

>NTDB_id=327174 FNV62_RS07830 WP_144314924.1 1627933..1628157(-) (dinR/lexA) [Streptomyces sp. RLB3-17]
MANHRVDYLTSTQEHILRCIRESITERGESPTMQEIGEHVGMRSRASVHYHLGRIEALGYIVREPHRPRGIRLT

Nucleotide


Download         Length: 225 bp        

>NTDB_id=327174 FNV62_RS07830 WP_144314924.1 1627933..1628157(-) (dinR/lexA) [Streptomyces sp. RLB3-17]
ATGGCAAACCACAGGGTCGACTACCTCACCAGCACCCAGGAGCACATCCTGCGCTGCATCCGCGAGTCGATCACCGAACG
AGGTGAATCCCCGACCATGCAGGAGATCGGCGAGCATGTGGGCATGCGCAGCCGCGCCTCCGTGCACTACCACCTGGGAC
GGATCGAAGCGCTCGGGTACATCGTCCGCGAGCCTCACAGGCCGCGCGGGATCAGGCTCACATGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(9-70)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

43.077

87.838

0.378