Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   FNV62_RS00170 Genome accession   NZ_CP041610
Coordinates   37423..38115 (+) Length   230 a.a.
NCBI ID   WP_054229554.1    Uniprot ID   -
Organism   Streptomyces sp. RLB3-17     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 32423..43115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNV62_RS00150 (FNV62_00175) - 32871..33600 (-) 730 Protein_31 Ku protein -
  FNV62_RS00155 (FNV62_00180) - 34206..34868 (+) 663 WP_225900780.1 class I SAM-dependent methyltransferase -
  FNV62_RS00160 (FNV62_00185) - 35223..36101 (+) 879 WP_143611800.1 CPBP family intramembrane glutamic endopeptidase -
  FNV62_RS00165 (FNV62_00190) - 36150..37418 (+) 1269 WP_143651892.1 sensor histidine kinase -
  FNV62_RS00170 (FNV62_00195) vraR 37423..38115 (+) 693 WP_054229554.1 response regulator Regulator
  FNV62_RS00175 (FNV62_00200) - 38511..38696 (+) 186 WP_143611801.1 hypothetical protein -
  FNV62_RS00180 (FNV62_00205) - 38952..39155 (-) 204 WP_143611802.1 hypothetical protein -
  FNV62_RS00185 (FNV62_00210) - 39383..40864 (+) 1482 Protein_38 IS21/IS408/IS1162 family transposase -
  FNV62_RS00190 (FNV62_00215) - 40877..41353 (-) 477 WP_143611803.1 hypothetical protein -
  FNV62_RS57430 - 41391..41777 (+) 387 WP_275902501.1 hypothetical protein -
  FNV62_RS00200 (FNV62_00225) - 41832..43113 (-) 1282 Protein_41 ATP-binding protein -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 24788.62 Da        Isoelectric Point: 6.9823

>NTDB_id=327167 FNV62_RS00170 WP_054229554.1 37423..38115(+) (vraR) [Streptomyces sp. RLB3-17]
MSDAPPPIRVLVCDDQELVRTGYVTIFSAQPDMEVVGEAENGHVAVEAARRLRPDVVVMDIRMPLLDGIQATRQLAGPGA
GEPPKVLVVTTFNVDAHVYDALRAGASGFLLKDAPPAELVNGIRTVARGEALLAPAVTRHLIGHYAEHLRPAESSRPARQ
DVVRALTPRELEVLRQMAQGLSNAEIAAQLYITPETVKTYVSRILAKLALRDRVQAVVLAYRVGLASGTP

Nucleotide


Download         Length: 693 bp        

>NTDB_id=327167 FNV62_RS00170 WP_054229554.1 37423..38115(+) (vraR) [Streptomyces sp. RLB3-17]
GTGAGCGATGCGCCACCACCGATCCGTGTGCTCGTCTGCGACGACCAGGAACTGGTGCGGACCGGCTACGTCACCATCTT
CTCGGCCCAGCCCGACATGGAGGTCGTCGGCGAGGCCGAGAACGGGCACGTGGCGGTGGAAGCCGCGCGGCGGCTGCGCC
CCGACGTGGTCGTGATGGACATCCGGATGCCCCTGCTCGACGGCATCCAGGCGACCCGCCAACTGGCCGGCCCCGGCGCC
GGGGAACCACCGAAGGTACTGGTCGTCACCACGTTCAACGTCGACGCCCATGTCTACGACGCACTGCGCGCCGGAGCCAG
CGGCTTCCTGCTCAAGGACGCGCCGCCCGCGGAGCTGGTGAATGGCATCCGGACCGTCGCCCGGGGCGAGGCCCTGCTCG
CGCCCGCCGTCACCCGCCACCTCATCGGCCACTACGCCGAGCACCTGCGCCCCGCCGAGTCCTCCCGGCCGGCCCGGCAG
GACGTCGTACGCGCGCTGACACCCCGCGAACTCGAGGTGCTCCGGCAGATGGCCCAGGGGTTGTCCAACGCGGAGATAGC
GGCGCAGCTGTACATCACCCCCGAGACGGTCAAGACCTATGTCTCGCGGATCCTGGCCAAGCTCGCCCTGCGCGACCGGG
TCCAGGCGGTCGTCCTCGCCTACCGGGTCGGACTGGCGTCCGGCACACCGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(10-123)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.914

96.087

0.374

Multiple sequence alignment