Detailed information NTG0327152

Bioinformatically predicted

Overview

• Name: comF
• Type: Machinery gene
• Locus tag: EG343_RS09070
• Genome accession: NZ_CP033923
• Coordinates: 2034437..2035090 (+)
• Length: 217 a.a.
• NCBI ID: WP_123857496.1
• Uniprot ID: A0AAD0YP90
• Organism: Chryseobacterium nakagawai strain G0041
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2029437..2040090

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EG343_RS09055 (EG343_09140)	aceA	2029796..2031076 (-)	1281	WP_123857493.1	isocitrate lyase	-
EG343_RS09060 (EG343_09145)	aceB	2031195..2032769 (-)	1575	WP_123857494.1	malate synthase A	-
EG343_RS09065 (EG343_09150)	-	2032897..2034369 (+)	1473	WP_123857495.1	helix-turn-helix domain-containing protein	-
EG343_RS09070 (EG343_09155)	comF	2034437..2035090 (+)	654	WP_123857496.1	ComF family protein	Machinery gene
EG343_RS09075 (EG343_09160)	-	2035227..2035913 (+)	687	WP_123857497.1	alpha/beta fold hydrolase	-
EG343_RS09080 (EG343_09165)	upp	2035916..2036566 (-)	651	WP_123857498.1	uracil phosphoribosyltransferase	-

Sequence

Protein

• Length: 217 a.a.
• Molecular weight: 25391.23 Da
• Isoelectric Point: 7.0734

>NTDB_id=327152 EG343_RS09070 WP_123857496.1 2034437..2035090(+) (comF) [Chryseobacterium nakagawai strain G0041]
MILDLLFPNRCLHCNRIIEADLLVCDLCFGQIHFTHYDYTKNNPVKEQCQLFFPVENTYALIQFEEENLSRKIIHELKYR
NREITGKILAEWTCERLDFKDRKPDLFVSVPLHPKKQRERGYNQLHLYTETLSKYFEIPFDHELIKRNYYSKAQALKNKK
GRLETINTFSATQPITGKNILLIDDVFTTGTTISSIAWEVLNAGDNTVSVLVIAMDV

Nucleotide

• Length: 654 bp

>NTDB_id=327152 EG343_RS09070 WP_123857496.1 2034437..2035090(+) (comF) [Chryseobacterium nakagawai strain G0041]
ATGATATTGGACTTACTCTTTCCTAACCGATGCCTTCATTGTAACAGAATTATTGAAGCAGATCTTTTGGTTTGTGACCT
ATGCTTTGGTCAAATTCATTTTACCCATTATGACTACACCAAAAATAATCCAGTTAAAGAACAGTGCCAACTATTTTTTC
CTGTGGAGAATACGTATGCGCTTATACAGTTTGAGGAGGAAAACTTAAGTCGGAAAATCATTCATGAATTAAAATACAGA
AACAGGGAAATCACCGGAAAAATTTTAGCAGAATGGACGTGTGAACGATTGGATTTTAAAGATCGGAAACCTGATCTTTT
CGTAAGTGTTCCTCTTCACCCTAAAAAACAGAGAGAAAGAGGTTACAATCAGCTTCATTTATATACAGAAACTCTTTCAA
AATATTTTGAAATACCATTTGACCATGAATTAATCAAGAGAAACTATTATTCCAAAGCCCAAGCTCTAAAGAATAAAAAA
GGCAGATTGGAAACGATCAATACATTTTCAGCTACCCAACCTATAACTGGAAAAAATATTCTGCTCATTGATGATGTTTT
TACAACAGGAACTACGATTTCTTCTATTGCCTGGGAAGTACTCAATGCTGGTGATAATACGGTTAGTGTATTGGTGATAG
CAATGGATGTATAG

Domains

Predicted by InterproScan.

• Double zinc ribbon domain (DZR_2) (2-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comF	Riemerella anatipestifer ATCC 11845 = DSM 15868	50.463	99.539	0.502