Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   FNV66_RS38075 Genome accession   NZ_CP041607
Coordinates   8180804..8181487 (+) Length   227 a.a.
NCBI ID   WP_143603139.1    Uniprot ID   -
Organism   Streptomyces sp. S1D4-14     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8175804..8186487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNV66_RS38055 (FNV66_38570) - 8175823..8176053 (-) 231 WP_054229894.1 hypothetical protein -
  FNV66_RS38060 (FNV66_38575) - 8176494..8178617 (+) 2124 WP_054229895.1 type IIA DNA topoisomerase subunit B -
  FNV66_RS38065 (FNV66_38585) - 8179135..8179659 (+) 525 WP_143603137.1 DUF1453 family protein -
  FNV66_RS38070 (FNV66_38590) - 8179656..8180807 (+) 1152 WP_143603138.1 sensor histidine kinase -
  FNV66_RS38075 (FNV66_38595) vraR 8180804..8181487 (+) 684 WP_143603139.1 response regulator transcription factor Regulator
  FNV66_RS38080 (FNV66_38600) - 8181593..8182075 (+) 483 WP_054229899.1 DUF485 domain-containing protein -
  FNV66_RS38085 (FNV66_38605) - 8182072..8183664 (+) 1593 WP_143603140.1 cation acetate symporter -
  FNV66_RS38090 (FNV66_38610) - 8183779..8184471 (-) 693 WP_054229901.1 response regulator -
  FNV66_RS38095 (FNV66_38615) - 8184633..8185448 (+) 816 WP_054229902.1 ABC transporter ATP-binding protein -
  FNV66_RS38100 (FNV66_38620) - 8185438..8186313 (+) 876 WP_097286529.1 ABC transporter permease -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24143.69 Da        Isoelectric Point: 5.6827

>NTDB_id=327148 FNV66_RS38075 WP_143603139.1 8180804..8181487(+) (vraR) [Streptomyces sp. S1D4-14]
MTEEGTRKPARVVVADDQTVVREGIVMLLGLLPGIEVVGAAGDGHEAVALVAELAPDVVLMDLRMPRCDGVEATRRIRAE
HPGTQVVVLTTYADDESLFPALRAGARGYLTKDAGGDEIVRAVESVLSGDAGLSPSIQRRLLERLSEPAPSAVAPVEPPD
GLTTRETEVLLLIAEGLTNHEIARRLHVSPATVKTHINNLFAKTGLKDRAQAVRYAFGKGLVRPPTG

Nucleotide


Download         Length: 684 bp        

>NTDB_id=327148 FNV66_RS38075 WP_143603139.1 8180804..8181487(+) (vraR) [Streptomyces sp. S1D4-14]
ATGACGGAGGAGGGGACCAGGAAGCCGGCTCGGGTCGTGGTGGCGGACGACCAGACCGTGGTGCGCGAAGGCATTGTGAT
GCTGCTGGGCCTGCTGCCGGGGATCGAGGTCGTGGGTGCGGCGGGGGACGGGCACGAGGCCGTGGCGCTGGTGGCCGAGC
TCGCCCCTGACGTCGTGCTGATGGACCTGCGCATGCCGCGCTGCGACGGCGTCGAGGCGACCCGGCGTATTCGCGCCGAG
CATCCGGGGACACAGGTCGTCGTGCTCACCACGTACGCGGACGACGAGTCGCTGTTCCCCGCGCTCAGAGCGGGAGCCCG
GGGCTATCTCACGAAGGACGCGGGCGGCGACGAGATCGTGCGCGCGGTGGAAAGCGTGCTGTCCGGGGACGCGGGACTCT
CGCCGAGCATCCAACGGCGGCTGCTGGAGCGGCTGTCGGAGCCGGCGCCCTCGGCCGTTGCGCCCGTGGAGCCGCCCGAT
GGGCTCACCACGCGGGAGACCGAGGTGCTGCTGCTGATCGCCGAGGGACTCACCAATCATGAGATCGCCCGCAGACTGCA
TGTCTCCCCCGCCACCGTGAAGACCCACATCAACAACCTCTTCGCCAAGACGGGCCTCAAGGACCGTGCTCAGGCGGTGC
GCTACGCCTTTGGGAAAGGTCTCGTACGGCCACCGACGGGATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(12-123)

Bacterial regulatory proteins, luxR family (GerE)

(161-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.437

93.833

0.37